tests in the same format

algo/tests/should-vdj-tests/0000-nck-TRB+.should-vdj.fa

->TRBD2*02_8/10/2_TRBJ2-7*01  [TRB+]
+>TRBD2*02 8/10/2 TRBJ2-7*01  [TRB+]
 CTGCGCTTCCTGCCGCTGCCcaGTGGTTGGGGGAGGGGGACtaGCAGGGAGGAAACATTTTTGTATcaTGGTGTAACATTGTGGGGACTAGTGTCAGTCCCCCTACGAGCAGTACTTCGGGCCGGGCACCAGGCTCACGGTTACAGGTAAGA
->TRBD2*02_3/9/7_TRBJ2-1*01  [TRB+]
+>TRBD2*02 3/9/7 TRBJ2-1*01  [TRB+]
 CTGCGCTTCCTGCCGCTGCCcaGTGGTTggggGAGGGGGACtaGCAGGGAGGAAACATTTTTGTATATGGTGTAACATTGTGGGGACTAGCGGGAAGTAGGAGGAATGAgCAGTTCTTCGGGCCAGGGACACGGCTCACCGTGCTAGGTAAGAAGG
->TRBD2*01_2/26/2_TRBJ2-3*01  [TRB+]
+>TRBD2*01 2/26/2 TRBJ2-3*01  [TRB+]
 CTGCGCTTCCTGCCGCTGCCcaGTGGTTGGGGGAGGGGGACtaGCAGGGAGGAAACATTTTTGTATATGGTGTAACATTGTGGGGACTAGCGGGGGAGAAATTTCCAGTGTCACCTCCGTTACACAGATACGCAGTATTTTGGCCCAGGCACCCGGCTGACAGTGCTCGGTAAGCGGG
 
 
 ###############################"
 
->TRBD1_0/14/0_TRBJ1-5  [TRB+]
+>TRBD1 0/14/0 TRBJ1-5  [TRB+]
 CCTGAgGAcGTGCCTGGAGGTGAGAAGGAAGCCCCCGGCCTGGTCCATACCCCACCACCAACTTGCATAATGGGGGGTGATGTCACCCACCCTCCACTCCCCTCAAAGGAGCAGCTGCTCTGGTGGTCTCTCCCAGGCTCTGGGGGCGGACCCATGGGAGGGGCTGTTTTTGTACAAAGCTGTAACATTGTGGGGACAGGGGGCCCTTTTTTTCTTTATAGCAATCAgCCCCAGCATTTTGGTGATGGGACTCGACTCTCCATCCTAGgtaagttggcagaatcaggg
 
->TRBD1_2/6/2_TRBJ1-3*01  [TRB+]
+>TRBD1 2/6/2 TRBJ1-3*01  [TRB+]
 CCCACCACCAACttGcAtaacGgggggtGatgtCACCCaCCCtCCaCtCCCCtCAAtggAGCtGCtGCtCtGGtggtCtCtCCCagGCtCtGgggGcggAcCCACGGGaggggCtGtttttGtaCAAaGCtgtAACAttGtGgggAcAGGGGaaaaaaCtgGaAaCACCAtatattttGGaGaggGaaGttGGCtCACtGt
 
->TRBD2*02_3/5/4_TRBJ2-7*02  [TRB+]
+>TRBD2*02 3/5/4 TRBJ2-7*02  [TRB+]
 CTGCGCTTCCTGCCGCTGCCCaGTGGTTGGGGGAGGGGGACtaGCAGGGAGGAAACATTTTTGTATCATGGTGTAACATTGTGGGGACTAGCGGGATcATTTACGAGCAGTACGTCGGGCCGGGCACCAGGCTCACGGTTACaGGTAAGA

algo/tests/should-vdj-tests/0000-nck-TRB.should-vdj.fa

@@ -10,14 +10,14 @@ AACGGTGTAGTGGATGATTCACAGTTGCCTAAGGATCGATTTTCTGCAGAGAGGCTCAAAGGAGTAGACTCCACTCTCAA
 ##############################################
 
 # Erreur de nomage a arbitrer (sanger ET vidjil faux ? )
->TRBV10-2*01_4/7/4_TRBJ1-2*01  [TRB] TODO
+>TRBV10-2*01 4/7/4 TRBJ1-2*01  [TRB] TODO
 GCTGATATTACAGATAAAGGAgAAGTCCCCGATGGCTATGTTGTCTCCAGATCCAAGACAGAGAATtTCCCCCTCACTCTGGAGTCaGCtACCCGCTCCCAgACATCTGTGTATTTCTGCGCCaGCAGTGCCACTAgCTaTGGCTACACCTTCGGTTCGGGGACCAGGTTAACCGTTGTAGGTAAG
 
 # verifier seq
->TRBV19*03_0/20/4_TRBJ1-5*01  [TRB]
+>TRBV19*03 0/20/4 TRBJ1-5*01  [TRB]
 GAGATATAGCTGAAGGGTACAGCGTCTCTCGGGAGAAGAAGGAATCCTTTCCTCTCACTGTGACATCGGCCCAAAAGAACCCGACAGCTTTCTATCTCTGTGCCAGTAGTCCCCACGGCGCCATAACGGAACAGCCCCAGCATTTTGGTGATGGGACTCGAC
 
->TRBV21-1_5/16/1_TRBJ2-1  [TRB]
+>TRBV21-1 5/16/1 TRBJ2-1  [TRB]
 AAAAACTCATCCTGTACCTTGGAGATCCAGTCCACGGAGTCAGGGGACACAGCACTGTATTTcTGTGCCAGCAGCGCCATGGAAGTCAACATCCTACAATGAGCAGTTCTTCGGGCCAGGGACACGGCTCACCGTGCTAGgtaagaaggg
 
 

algo/tests/should-vdj-tests/0000-nck-TRD+.should-vdj.fa

->TRDD2_3/7/0_TRDD3  [TRD+]
+>TRDD2 3/7/0 TRDD3  [TRD+]
 gcgGGTGGtGATGGCAAAGTGCCAAGGAAAGGGAAAAAGGAAGAAGAGGGTTTTTATACTGATGTGTTTCATTGTGCCTTCCCCCCCCTACTGGGGGAtACGCACAGTGCTACAAAACCTACAgAGACCTGTACAAAAACTGCAGGGGCAAAAGTGCCATTTCCCTGGGATATCCTCACCCTGGGTcCcaaa
 
 # double DD non detecte
->TRDD2*01_0/4/3_TRDD3_0/2/3_TRDJ1*01  [TRD+] TODO
+>TRDD2*01 0/4/3 TRDD3 0/2/3 TRDJ1*01  [TRD+] TODO
 AgcgggtggtgatggcaaagtgccaaggaaagggaaaaaggaagaagagggtttttatactgatgTGTTTCATTGTGCCTTCCTACGTGAGGGGGATACGCCCCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
 
 # double DD non detecte
->TRAV29/DV5*01_3/8/3_TRDD2_1/0/3_TRDD3_0/0/2_TRDJ1  [TRD+] TODO
+>TRAV29/DV5*01 3/8/3 TRDD2 1/0/3 TRDD3 0/0/2 TRDJ1  [TRD+] TODO
 cattAggtAAAAATGaagatGGAAGATTCACTGTCTTCTTAAACAAAAGTGCCAAGCACCtctcTctGCACATTGTGCCCTCCCAGCCTGGAGACTCTGCAGTGTACTTCTGTGCAGCAACACCGAGATCCTAGGGGGATACgACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGgAACa
 
 ######################################
 # double DD non detecte
->TRDV1_2/7/2_TRDD2_0/3/0_TRDD3_3/6/0_TRDJ1  [TRD+] TODO
+>TRDV1 2/7/2 TRDD2 0/3/0 TRDD3 3/6/0 TRDJ1  [TRD+] TODO
 CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAATCTCGATTTCCTACCGTACTGGGGGATCTCGGGACACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
 
->TRDD2_1/3/15_TRDD3  [TRD+]
+>TRDD2 1/3/15 TRDD3  [TRD+]
 AgcgggtggtgatggcaaagtgccaaggaaagggaaaaaggaagaagagggtttttatactgatgtgtttCattgtgCCTTCCTATGGcagtgctacaaaacctacagagacctgtacaaaaactgcaggggcaaaagtgccatttccctgggatatcctcaccctgggtcccatgcctcaggagacaaacacagcaagcagcttccctc
 
 #double DD non detecte
->TRDD2_18/6/0_TRDD3_5/5/0_TRDJ1  [TRD+] TODO
+>TRDD2 18/6/0 TRDD3 5/5/0 TRDJ1  [TRD+] TODO
 AgcgggtggtgatggcaaagtgccaaggaaagggaaaaaggaagaagagggtttttatactgatgtgtCCAGGGACTGGGGGCCAGTACACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAC
 
->TRDD2_0/0/9_TRDD3  [TRD+]
+>TRDD2 0/0/9 TRDD3  [TRD+]
 AgcgggtggtgatggcaaagtgccaaggaaagggaaaaaggaagaagagggtttttatactgatgtgtttCattgtgCCTTCCTACTACGcacagtgctacaaaacctacagagacctgtacaaaaactgcaggggcaaaagtgccatttccctgggatatcctcaccctgggtcccatgcctcaggagacaaacacagcaagcagcttccctc
 
->TRDV2_0/7/0_TRDD3  [TRD+]
-GAAtcGAtAttGCAAAGAACCtGGCtGtACttAAGatACttGCACCAtCAGaGaGaGAtGAAGgGtCttACtACtGtGCCtGtGACACCCCCCtGTACtGGGGGAtACGCACAGtGCtACAAAACCtACAGAGACCtGTACAAAAACtGCAGGGGCAAAAGtGCCATttCCCtGGGAtAtCCtCACCCtGGGTCCCAA
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+>TRDV2 0/7/0 TRDD3  [TRD+]
+GAAtcGAtAttGCAAAGAACCtGGCtGtACttAAGatACttGCACCAtCAGaGaGaGAtGAAGgGtCttACtACtGtGCCtGtGACACCCCCCtGTACtGGGGGAtACGCACAGtGCtACAAAACCtACAGAGACCtGTACAAAAACtGCAGGGGCAAAAGtGCCATttCCCtGGGAtAtCCtCACCCtGGGTCCCAA
\ No newline at end of file

algo/tests/should-vdj-tests/0000-nck-TRD.should-vdj.fa

->TRDV1*01_0/0/3_TRDD3_4/11/0_TRDJ1*01  [TRD]
+>TRDV1*01 0/0/3 TRDD3 4/11/0 TRDJ1*01  [TRD]
 CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAACTAGGGGACTGGTCCCCTTACACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAAc
->TRAV29/DV5*01_0/9/0_TRDD3_3/9/2_TRDJ1*01  [TRD]
+
+>TRAV29/DV5*01 0/9/0 TRDD3 3/9/2 TRDJ1*01  [TRD]
 GAtAAAAATGAAGatGGAAGaTTcaCTGTCTTCTTAAAcAAAAGTGCcaAGCACCTCTCTCTGCACATTGTGCCCTCCCAGCCTGGAGACTCTGCAGTGTACTTCTGTGCAGCAAGCGCGAATCCTGACTGGGGGATCGAGGGGGAACCGATAAACTCATCTTTGGAAAAGGAACCCGTGTGACTGTGGAACA
->TRDV1_5/14/0_TRDJ1*01  [TRD]
+
+>TRDV1 5/14/0 TRDJ1*01  [TRD]
 GCCttAcAGCtAGAAgattcAGCAAaGtACtnttGtGCtCttGGGACCCtttCCcGtGtACACCGATAAACtCAtCtttGGAAAAgGAACCCGtGtGACtGTGGAACA
 
 
 ################################################
 
->TRDV1_3/6/0_TRDD2_1/9/8_TRDJ1  [TRD]
+>TRDV1 3/6/0 TRDD2 1/9/8 TRDJ1  [TRD]
 TGAAATCCGTCGCCTTAACcTtTcaGCCTTACAGCTAGAAgAttcaGCAAAGTACTtTTGTGCTCTtGGGGATCCCGGCCTTCCTATGTAAgAGGAAACTCATCTTTGGAAAAgGAACCCGtGTGACtGTGGAACA
 
 # a arbitrer
->TRDV1_7/5/0_TRDD3_2/5/4_TRDJ1  [TRD] TODO
+>TRDV1 7/5/0 TRDD3 2/5/4 TRDJ1  [TRD] TODO
 AAGCtAGAAgattcAGCAAaGtACttttGtGCtCttGtGCtAACtGGGGGatAAAGAtCGAtAAACtCAtCtttGGAAAAgGAACCCGtGtGACtGtGGAACA
 
->TRDV1_4/13/2_TRDD3_2/8/2_TRDJ1  [TRD]
+>TRDV1 4/13/2 TRDD3 2/8/2 TRDJ1  [TRD]
 CAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGTAGCTCtTAgGAAtGGGGGATAGAtGACGGACCGATAAACtCATCTTtGGAAAAgGAACCCGtGtGACtGTGGAACa
 

algo/tests/should-vdj-tests/0000-nck-TRG.should-vdj.fa

->TRGV4_3/15/2_TRGJ1*01  [TRG]
+>TRGV4 3/15/2 TRGJ1*01  [TRG]
 GCGTCTTCTGTacTATGACTCCTACACCTCcaGCGTTGTGTTGGAATcaGGAATcaGCCCAGGGAAGTATGATACTTATGGAAGCACAAGGAAgAACTTGAGAATGATACTGCGAAATCTTATTGAAAATGACTCTGGAGTCTATTACTGTGCCACCTGGGATAAGGAGGGACATAAgATTATTATAAGAAACTCTTTGGCAGTGGAACAACACTGGTTGTCACAGGTA
 
->TRGV11_2/5/0_TRGJ1  [TRG]
+>TRGV11 2/5/0 TRGJ1  [TRG]
 TGGTGTACCaCTGTGCcTGCtgGaTTAGGCTCCTAGAATTATTATAAGAAACTCTTTGGCAGTGGAACAACACTGGTTGTCACAGGTaagtatcggaagaatacaacattccaaggtaatagagggaaagcaggaa
 
 # arbitrage difficile
->TRGV10*01_14/18/1_TRGJ1*01   [TRG]  TODO
+>TRGV10*01 14/18/1 TRGJ1*01   [TRG]  TODO
 ATCCtttACcaTCaAGtCCGtAGAGAAAGAAGACAtGGCCGTttACTACtGtGCtACCGCtGGAgGtCCttACAAttAtTAtAAGAAACtCTttGGCAGTGGAACAACACtGGTtGTCACAGGTA
 
 
 ##########################################
 # verifier TRGJ1*01 et TRGJ1-2
->TRGV11_11/12/0_TRGJ1*01  [TRG]
+>TRGV11 11/12/0 TRGJ1*01  [TRG]
 TCTTCCACTTCCACTTtgAAAATAAAGTTCTTAGAGAAAGAAGATGAGGTGGTGTACCaCTGTGCCTGCtaGTCACCTCATCGAATTATTATAAGA
 
 # a arbitrer
->TRGV10-02_1/15/4_TRGJ1-1  [TRG] TODO
+>TRGV10-02 1/15/4 TRGJ1-1  [TRG] TODO
 TCTcaAACtCTcaCtcTcaATCCTtACcaTcaAGtCCGTAGAGAAAGAAGACATGGCCGTtTACTACtGTGCTGCGTGGGATTTGCAGCAACTtGAACTATTATAAGAAACTCTTTGGCAGTGGAACAACACTGGTTGTCACAGGTaagtatcggaagaatacaacattccaaggtaatagagggaaagcaggaa
 
 # a arbitrer
->TRGV2_0/6/6_TRGJ1-1  [TRG] TODO
+>TRGV2 0/6/6 TRGJ1-1  [TRG] TODO
 AAATGACTTTGGGGTCTATTACTGTGCCACCTGGGACGGGCCGATTTTATAAGAAACTCTTTGGCAGTGGAACAACACTGGTTGTCACAGGTaagtatcggaagaatacaacattccaaggtaatagagggaaagcaggaa
 
 

algo/tests/should-vdj-tests/0118-lil-IGH-TRG.should-vdj.fa

-
->IGHV3-11*01_1/CCCCCGAGAGCCGAGGGGGGGAGAGATCCCGGGGGG/6_IGHD6-6*01_1/TCCAGCTCGTCCGGGGG/12_IGHJ4*02__IGH
+>IGHV3-11*01 1/CCCCCGAGAGCCGAGGGGGGGAGAGATCCCGGGGGG/6 IGHD6-6*01 1/TCCAGCTCGTCCGGGGG/12 IGHJ4*02 [IGH]
 GGGCTGGAGTGGGTTTCATACATTAGTAGTAGTGGTAGTACCATATACTACGCAGACTCTGTGAAGGGCCGATTCACCATCTCCAGGGACAACGCCAAGAACTCACTGTATCTGCAAATGAACAGCCTGAGAGCCGAGGACACGGCCGTGTATTACTGTGCGAGAGCCCCCGAGAGCCGAGGGGGGGAGAGATCCCGGGGGGAGCAGCTCGTCTCCAGCTCGTCCGGGGGACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGT
 
->IGHV3-9*01_11/A/5_IGHD2-2*02_1/GGAATACGATATTTTGACTGGT/8_IGHJ6*03__IGH
+>IGHV3-9*01 11/A/5 IGHD2-2*02 1/GGAATACGATATTTTGACTGGT/8 IGHJ6*03 [IGH]
 GGGGGAGGCTTGGTACAGCCTGGCAGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTTGATGATTATGCCATGCACTGGGTCCGGCAAGCTCCAGGGAAGGGCCTGGAGTGGGTCTCAGGTATTAGTTGGAATAGTGGTAGCATAGGCTATGCGGACTCTGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACTCCCTGTATCTGCAAATGAACAGTCTGAGAGCTGAGGACACGGCCTTGTATTACTGAATTGTAGTAGTACCAGCTGCTATACGGAATACGATATTTTGACTGGTTACTACTACTACATGGACGTCTGGGGCAAAGGGACCCTGGTCACCGTCTCCTCAGGT
 
->TRGV2*01_1/C/0_TRGJ1*02__TRG
+>TRGV2*01 1/C/0 TRGJ1*02  [TRG]
 GGAAGGCCCCACAGCGTCTTCAGTACTATGACTCCTACAACTCCAAGGTTGTGTTGGAATCAGGAGTCAGTCCAGGGAAGTATTATACTTACGCAAGCACAAGGAACAACTTGAGATTGATACTGCGAAATCTAATTGAAAATGACTCTGGGGTCTATTACTGTGCCACCTGGGACGGCTTATTATAAGAAACTCTTTGGCAGTGGAACAACAC
 
->TRGV3*01_0/CC/0_TRGJ1*01__TRG
+>TRGV3*01 0/CC/0 TRGJ1*01  [TRG]
 GGAAGGCCCCACAGCGTCTTCTGTACTATGACGTCTCCACCGCAAGGGATGTGTTGGAATCAGGACTCAGTCCAGGAAAGTATTATACTCATACACCCAGGAGGTGGAGCTGGATATTGAGACTGCAAAATCTAATTGAAAATGATTCTGGGGTCTATTACTGTGCCACCTGGGACAGGCCGAATTATTATAAGAAACTCTTTGGCAGTGGAACAACAC
 
 

algo/tests/should-vdj-tests/0119-lil-IGK+-TRA+D-TRD+-TRG.should-vdj.fa

 
->TRGV9*01_8/CTCACGAGGG/3_TRGJP1*01__TRG
+>TRGV9*01 8/CTCACGAGGG/3 TRGJP1*01  [TRG]
 CGGCACTGTCAGAAAGGAATCCGGCATTCCGTCAGGCAAATTTGAGGTGGATAGGATACCTGAAACGTCTACATCCACTCTCACCATTCACAATGTAGAGAAACAGGACATAGCTACCTACTACTGTGCCTGTCTCACGAGGGCCACTGGTTGGTTCAAGATATTTGCTGAAGGGACTAAGCTCATAGTAACTTCGCCTGGTAA
 
 # Intron -2/0/-10 KDE ?
 >Intron 2/0/9 KDE  [IGK+]
 CGTGGCACCGCGAGCTGTAGACAGAGCCGCGGTCTTTCTCGATTGAGTGGCTTTGGTGGCCATGCCACCGCGCTCTTGGGGCAGCCGCCTTGCCGCTAGTGGCCGTGGCCACCCTGTGTCTGCCCGATTGATGCTGCCGTAGCCAGCTTTCCTGAGTGGCAGCCCAGGGCGACTCCTCATGAGTCTGCAGCTGCATTTTTGCCATATCCACTATTTGGAGTCTGACCTCCCTAGGAAGCCTCCCTGCTCCCTAGGACAACCTGCTCTGACCTCTGAGG
 
->IGKV3-7*04_1/GTGGA/11_KDE__IGK+ 
+>IGKV3-7*04 1/GTGGA/11 KDE  [IGK+] 
 CCCAGGCTCCTCATCTATGATGCATCCACCAGGGCCACTAGCATCCCAGCCAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGCCTGCAGCCTGAAGATTTTGCAGTTTATTACTGTCAGCAGGATTATAACTTACCTCGTGGAGGCAGCCCAGGGCGACTCCTCATGAGTCTGCAGCTGCATTTTTGCCATATCCACTATTTGGAGTCTGACCTCCCTAGGAAGCCTCCCTGCTCCCTAGGACAACCTGCTCTGACCTCTGAGG
 
->TRGV2*01_9/CCCTGG/1_TRGJP1*01__TRG 
+>TRGV2*01 9/CCCTGG/1 TRGJP1*01  [TRG] 
 GGAAGGCCCCACAGCGTCTTCAGTACTATGACTCCTACAACTCCAAGGTTGTGTTGGAATCAGGAGTCAGTCCAGGGAAGTATTATACTTACGCAAGCACAAGGAACAACTTGAGATTGATACTGCGAAATCTAATTGAAAATGACTTTGGGGTCTATTACTGTGCCACCCCCTGGTACCACTGGTTGGTTCAAGATATTTGCTGAAGGGACTAAGCTCATAGTAACTTCGCCTGGTAA
 
 # or TRGJ1*01
->TRGV5*01_0/CAGAGG/7_TRGJ1*02__TRG
+>TRGV5*01 0/CAGAGG/7 TRGJ1*02  [TRG]
 GGAAGGCCCCACAGCGTCTTCTGTACTATGACGTCTCCAACTCAAAGGATGTGTTGGAATCAGGACTCAGTCCAGGAAAGTATTATACTCATACACCCAGGAGGTGGAGCTGGATATTGATACTACGAAATCTAATTGAAAATGATTCTGGGGTCTATTACTGTGCCACCTGGGACAGGCAGAGGAAGAAACTCTTTGGCAGTGGAACAACAC
 
 # or TRDV2*03
->TRDV2*01_0/C/1_TRDD3*01_4/CCGCCT/0_TRAJ29*01__TRA+D
+>TRDV2*01 0/C/1 TRDD3*01 4/CCGCCT/0 TRAJ29*01  [TRA+D]
 ATACCGAGAAAAGGACATCTATGGCCCTGGTTTCAAAGACAATTTCCAAGGTGACATTGATATTGCAAAGAACCTGGCTGTACTTAAGATACTTGCACCATCAGAGAGAGATGAAGGGTCTTACTACTGTGCCTGTGACACCCCTGGGGGACCGCCTGGAATTCAGGAAACACACCTCTTGTCTTTGGAAAGGGCACAAGACTTTCTGTGATTGCAAGTAAGTGTTTCTAGCCATCCTTGATTTTGATCAGCAATGGCTTCTTCCCTTGAATTATTTTTCAGTGTACCTAGAATGCTTTTGCC
 
 # other designations are possible
->TRDV2*02_0/GGACCCTTTT/0_TRDD3*01__TRD+
+>TRDV2*02 0/GGACCCTTTT/0 TRDD3*01  [TRD+]
 ATACCGAGAAAAGGACATCTATGGCCCTGGTTTCAAAGACAATTTCCAAGGTGACATTGATATTGCAAAGAACCTGGCTGTACTTAAGATACTTGCACCATCAGAGAGAGATGAAGGGTCTTACTACTGTGCCTGTGACAGGACCCTTTTACTGGGGGATACGCACAGTGCTACAAAACCTACAGAGACCTGTACAAAAACTGCAGGGGCAAAAGTGCCATTTCCCTGGGATATCCTCACCCTGGGTCCCA
 

algo/tests/should-vdj-tests/0120-lil-TRA+D.should-vdj.fa

->TRDV2*02_6/CGGGGCCC/3_TRDD3*01_5//27_TRAJ29*01__TRA+D
+>TRDV2*02 6/CGGGGCCC/3 TRDD3*01 5//27 TRAJ29*01  [TRA+D]
 ATACCGAGAAAAGGACATCTATGGCCCTGGTTTCAAAGACAATTTCCAAGGTGACATTGATATTGCAAAGAACCTGGCTGTACTTAAGATACTTGCACCATCAGAGAGAGATGAAGGGTCTTACTACTGTGCCTCGGGGCCCGGGGGTTGGAAAGGGCACAAGACTTTCTGTGATTGCAAGTAAGTGTTTCTAGCCATCCTTGATTTTGATCAGCAATGGCTTCTTCCCTTGAATTATTTTTCAGTGTACCTAGAATGCTTTTGCC
\ No newline at end of file

algo/tests/should-vdj-tests/0124-lil-TRA+D.should-vdj.fa

->TRDV2*02_3/TGGTGG/3_TRDD3*01_3/CCCACCTCACTTG/3_TRAJ29*01__TRA+D
+>TRDV2*02 3/TGGTGG/3 TRDD3*01 3/CCCACCTCACTTG/3 TRAJ29*01  [TRA+D]
 ATACCGAGAAAAGGACATCTATGGCCCTGGTTTCAAAGACAATTTCCAAGGTGACATTGATATTGCAAAGAACCTGGCTGTACTTAAGATACTTGCACCATCAGAGAGAGATGAAGGGTCTTACTACTGTGCCTGTGTGGTGGGGGGGATCCCACCTCACTTGATTCAGGAAACACACCTCTTGTCTTTGGAAAGGGCACAAGACTTTCTGTGATTGCAAGTAAGTGTTTCTAGCCATCCTTGATTTTGATCAGCAATGGCTTCTTCCCTTGAATTATTTTTCAGTGTACCTAGAATGCTTTTGCC
\ No newline at end of file

algo/tests/should-vdj-tests/0125-lil-TRD+.should-vdj.fa

-
->TRDD2*01_1/AGG/1_TRDD3*01__TRD+
+>TRDD2*01 1/AGG/1 TRDD3*01  [TRD+]
 AGCGGGTGGTGATGGCAAAGTGCCAAGGAAAGGGAAAAAGGAAGAAGAGGGTTTTTATACTGATGTGTTTCATTGTGCCTTCCTA
 AGG
 CTGGGGGATACGCACAGTGCTACAAAACCTACAGAGACCTGTACAAAAACTGCAGGGGCAAAAGTGCCATTTCCCTGGGATATCCTCACCCTGGGTCCCA

algo/tests/should-vdj-tests/0147-lil-IGH-TRG.should-vdj.fa

-
-
->TRGV5*01_5/GGGCCAG/2_TRGJ1*02__TRG
+>TRGV5*01 5/GGGCCAG/2 TRGJ1*02  [TRG]
 CGTCTTCTGTACTATGACGTCTCCAACTCAAAGGATGTGTTGGAATCAGGACTCAGTCCAGGAAAGTATTATACTCATACACCCAGGAGGTGGAGCTGGATATTGATACTACGAAATCTAATTGAAAATGATTCTGGGGTCTATTACTGTGCCACCTGGGGGGCCAGATTATAAGAAACTCTTTGGCAGTGGAACAACAC
 
->1/TGAGGCGGAGAGATCGGGGG/5_IGHD2-15*01_1/AACGGTAAGT/5_IGHJ5*02__IGH
+>1/TGAGGCGGAGAGATCGGGGG/5 IGHD2-15*01 1/AACGGTAAGT/5 IGHJ5*02  [IGH]
 GGGGGAGGCTTGGTACAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTACGACATGCACTGGGTCCGCCAAGCTACAGGAAAAGGTCTGGAGTGGGTCTCAGCTATTGGTACTGCTGGTGACACATACTATCCAGGCTCCGTGAAGGGCCGATTCACCATCTCCAGAGAAAATGCCAAGAACTCCTTGTATCTTCAAATGAACAGCCTGAGAGCCGGGGACACGGCTGTGTATTACTGTGCAAGAGTGAGGCGGAGAGATCGGGGGATTGTAGTGGTGGTAGCTGCTACTCAACGGTAAGTTGGTTCGACCCCTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGT
 
 # or IGHV3-74*01 (-9)
->IGHV3-74*02_7/CCGCGGT/6_IGHD3-9*01_4/CTTCGAACA/7_IGHJ4*02__IGH
+>IGHV3-74*02 7/CCGCGGT/6 IGHD3-9*01 4/CTTCGAACA/7 IGHJ4*02  [IGH]
 GGAGTCGGGGGGAGGCTTAGTTCAGCCTGGGGGGTCCCTGAGACTCTCCTGTGCAGCCTCTGGATTCACCTTCAGTAGCTACTGGATGCACTGGGTCCGCCAAGCTCCAGGGAAGGGGCTGGTGTGGGTCTCACGTATTAATAGTGATGGGAGTAGCACAAGCTACGCGGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAAGAACACGCTGTATCTGCAAATGAACAGTCTGAGAGCCGAGGACACGGCTGTGTATTACTGCCGCGGTCGATATTTTGACTGGTTATTACTTCGAACATGACTACTGGGGCCAGGGAACCCTGGTCACCGTCTCCTCAGGT
 
 

algo/tests/should-vdj-tests/0169-lil-TRA+D.should-vdj.fa

->TRDV2*02_14/TCCCGGCCT/0_TRDD3*01_3/CCACGGC/4_TRAJ29*01__TRA+D
+>TRDV2*02 14/TCCCGGCCT/0 TRDD3*01 3/CCACGGC/4 TRAJ29*01  [TRA+D]
 ATACCGAGAAAAGGACATCTATGGCCCTGGTTTCAAAGACAATTTCCAAGGTGACATTGATATTGCAAAGAACCTGGCTGTACTTAAGATACTTGCACCATCAGAGAGAGATGAAGGGTCTTACTATCCCGGCCTACTGGGGGATCCACGGCTTCAGGAAACACACCTCTTGTCTTTGGAAAGGGCACAAGACTTTCTGTGATTGCAAGTAAGTGTTTCTAGCCATCCTTGATTTTGATCAGCAATGGCTTCTTCCCTTGAATTATTTTTCAGTGTACCTAGAATGCTTTTGCC
 
 
@@ -9,5 +9,5 @@ ATACCGAGAAAAGGACATCTATGGCCCTGGTTTCAAAGACAATTTCCAAGGTGACATTGATATTGCAAAGAACCTGGCTG
 # TRAJ29*01                    ggaaTTCA----GGAA-ACACACCTCTTGTCTTT...
 #                              12345678
 
->TRDD2*01_13//8_TRAJ29*01__TRA+D
+>TRDD2*01 13//8 TRAJ29*01  [TRA+D]
 AGCGGGTGGTGATGGCAAAGTGCCAAGGAAAGGGAAAAAGGAAGAAGAGGGTTTTTATACTGATGTGTTTCATGGAAGGGACACCTCTTGTCTTTGGAAAGGGCACAAGACTTTCTGTGATTGCAAGTAAGTGTTTCTAGCCATCCTTGATTTTGATCAGCAATGGCTTCTTCCCTTGAATTATTTTTCAGTGTACCTAGAATGCTTTTGCC
\ No newline at end of file

algo/tests/should-vdj-tests/0216-ren-IGH+.should-vdj.fa

 # IGHD7-27 is very short and can be found only with a small seed or
 # with upstream sequences
 
->IGHD7-27*01_10/CATTA/0_IGHJ3*02__IGH+
-TTTTTTTTTTTTTTTCAAGCAGAAGACGGCATACGAGATCTCTCTAAGTTACGGTAGCAGAGACTTGGTCTCACAGGCCCCCTACCAGCCGCAGGGTTTTGGCTGAGCTGAGAACCACTGTGC
-CATTA
-TGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCAGGTAAG
+>IGHD7-27*01 10/CATTA/0 IGHJ3*02  [IGH+]
+TTTTTTTTTTTTTTTCAAGCAGAAGACGGCATACGAGATCTCTCTAAGTTACGGTAGCAGAGACTTGGTCTCACAGGCCCCCTACCAGCCGCAGGGTTTTGGCTGAGCTGAGAACCACTGTGCCATTATGATGCTTTTGATATCTGGGGCCAAGGGACAATGGTCACCGTCTCCTCAGGTAAG

algo/tests/should-vdj-tests/0298-lil-IGK+.should-vdj.fa

->IGKV3D-20*01_3/AGGGG/11_KDE__IGK+
+>IGKV3D-20*01 3/AGGGG/11 KDE  [IGK+]
 CCCAGGCTCCTCATCTATGATGCATCCAGCAGGGCCACTGGCATCCCAGACAGGTTCAGTGGCAGTGGGTCTGGGACAGACTTCACTCTCACCATCAGCAGACTGGAGCCTGAAGATTTTGCAGTGTATTACTGTCAGCAGTATGGTAGCTCACC
 AGGGG
 GGCAGCCCAGGGCGACTCCTCATGAGTCTGCAGCTGCATTTTTGCCATATCCACTATTTGGAGTCTGACCTCCCTAGGAAGCCTCCCTGCTCCCTAGGACAACCTGCTCTGACCTCTGAGG
\ No newline at end of file

algo/tests/should-vdj-tests/0298-lil-TRD+.should-vdj.fa

->TRDD2*01_0/CGAG/3_TRDD3*01__TRD+
+>TRDD2*01 0/CGAG/3 TRDD3*01  [TRD+]
 AGCGGGTGGTGATGGCAAAGTGCCAAGGAAAGGGAAAAAGGAAGAAGAGGGTTTTTATACTGATGTGTTTCATTGTGCCTTCCCACCGAGGGGGGATACGCACAGTGCTACAAAACCTACAGAGACCTGTACAAAAACTGCAGGGGCAAAAGTGCCATTTCCCTGGGATATCCTCACCCTGGGTCCCA
\ No newline at end of file

algo/tests/should-vdj-tests/0443-lil-TRA+D.should-vdj.fa

@@ -3,5 +3,5 @@
 # but we are not seeking for two Ds at the time. So we will restrict
 # to the 5' and 3' genes.
 
->TRDD2*01_0/TGGGGGATCCCCATTGGAGGG/14_TRAJ29*01__TRA+D
+>TRDD2*01 0/TGGGGGATCCCCATTGGAGGG/14 TRAJ29*01  [TRA+D]
 AGCGGGTGGTGATGGCAAAGTGCCAAGGAAAGGGAAAAAGGAAGAAGAGGGTTTTTATACTGATGTGTTTCATTGTGCCTTCTTACTGGGGGATCCCCATTGGAGGGACACCTCTTGTCTTTGGAAAGGGCACAAGACTTTCTGTGATTGCAAGTAAGTGTTTCTAGCCATCCTTGATTTTGATCAGCAATGGCTTCTTCCCTTGAATTATTTTTCAGTGTACCTAGAATGCTTTTGCC
\ No newline at end of file

algo/tests/should-vdj-tests/0444-lil-TRA+D.should-vdj.fa

@@ -3,5 +3,5 @@
 # Either TRA+D (correct)
 # or TRD (TRV1-TRDD2-TRDJ2)
 
->TRDV1*01_5//3_TRDD2*01_1//7_TRAJ29*01__TRA+D
+>TRDV1*01 5//3 TRDD2*01 1//7 TRAJ29*01  [TRA+D]
 AGCGGGTGGTGATGGCAAATGCCAAGGAAGGGAAAAGGAAGAAGAGGGTTTTTATACTGATGTGTTTCATTGTGGGCACAGTGCTACAAAACCTACAGAGACCTGTACAAAAACTGCAGGGGCAAAAGTGCCATTTCCCTGGGATATCCTCACCCTGGTCCCAATGCAAAAAGTGGTCGCTATTCTGTCAACTTCAAGAAAGCAGCGAAATCCGTCGCCTTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGTCCTAAGGAAACACACCTCTTGTCTTTGGAAAGGGCACAAGACTTTCTGTGATTGCAAGTAAGTGTTTCTAGCCATCCTTGATTTTGATCAGCAATGGCTTCTTCCCTTGAATTATTTTTCAGTGTACCTAGAATGCTTTTGCC

algo/tests/should-vdj-tests/1043-IGK.should-vdj.fa

->IGKV1-5*03 -9/4/-1 IGKJ1*01  [IGK]
+>IGKV1-5*03 9/4/1 IGKJ1*01  [IGK]
 CTCCTGCTACTCTGGCTCCCAGGTGCCAAATGTGACATCCAGATGACCCAGTCTCCTTCCACCCTGTCTGCGTCTGTAGGAGACAGAGTCACCATCACCTGCCGGGCCAGTCAGAGTATTAATAACAACTTGGCCTGGTATCAGGAGAAGCCAGGGAAAGCCCCTAAGGTCCTGATCTATAAGGCGTCTAGTTTAGAAAGTGGGGTCCCATCAAGGTTCAGCGGCAGTGGATCTGGGACAGAATTCACTCTCACCATCAGCAGCCTGCAGCCTGATGATTTTGCAACCTATTACTGCCAACAATATAATAGACTTTGGACGTTCGGCCAAGGGACCAAGGTGGAAGTCAAACGAACTGTGGCTGCACCATCT
\ No newline at end of file

algo/tests/should-vdj-tests/1043-IGL.should-vdj.fa

->IGLV2-14*01 -12/4/-0 IGLJ3*02  [IGL]
+>IGLV2-14*01 12/4/0 IGLJ3*02  [IGL]
 GGTCCTGGGCCCAGTCTGCCCTGACTCAGCCTGCCTCCGTGTCTGGGTCTCCTGGACAGTCGATCACCATCTCCTGCACTGGAACCAGCAGTGACGTTGGTGGTTATAACTATGTCTCCTGGTACCAACAGCACCCAGGCAAAGCCCCCAAACTCATGATTTATGAGGTCAGTAATCGGCCCTCAGGGGTTTCTAATCGCTTCTCTGGCTCCAAGTCTGGCAACACGGCCTCCCTGACCATCTCTGGGCTCCAGGCGAGGACGAGGCTGATTATTACTGCAGCTCATATACAAGCTTTCTTGGGTGTTCGGCGGAGGGACCAAGCTG
\ No newline at end of file

algo/tests/should-vdj-tests/segment_simul.should-vdj.fa

@@ -2,7 +2,7 @@
 
 ### Copied from data/segment_simul.fa and algo/tests/segment_simul.should_get
 
->IGHV5-10-1*01_2/CTTC/3_IGHD1-14*01_1/GTTA/5_IGHJ5*01__IGH
+>IGHV5-10-1*01 2/CTTC/3 IGHD1-14*01 1/GTTA/5 IGHJ5*01  [IGH]
 aagtccatcagcactgcctacctgcagtggagcagcctgaaggcctcggacaccgccatgtattactgtgcga
 CTTC
 ataaccggaacca

algo/tests/should-vdj-tests/trb+.bd2-bj2-3.should-vdj.fa

->TRBD2*01_1/CCACT/2_TRBJ2-3*01__TRB+
+>TRBD2*01 1/CCACT/2 TRBJ2-3*01  [TRB+]
 GGTGTAACATTGTGGGGACTAGCGGGGGGCCACTCACAGATACGCAGTATTTTGGCCCAGGCACCCGGCTGACAGTGCTCGGTAAGCGGGGGCTCCCGCTGAAGCCCGGGAACTGGGGAGGGGGCGCCCCGGGACGCCGGGGGCGT

algo/tests/should-vdj-tests/trd-dd2up-dd3down.should-vdj.fa

 
->TRDD2*01_0//0_TRDJ1*01  TRD+
+>TRDD2*01 0//0 TRDJ1*01  [TRD+]
 TATACTGATGTGTTTCATTGTG
 ccttcctac
 acaccgataaactcatctttggaaaaggaacccgtgtgactgtggaaccaa
 
->TRDD2*01_0//0_TRDD3*01  TRD+
+>TRDD2*01 0//0 TRDD3*01  [TRD+]
 TATACTGATGTGTTTCATTGTG
 ccttcctac
 actgggggatacg
 CACAGTGCTACAAAACCTACAGAGACCTGTAC
 
->TRDV3*01_0//0_TRDD3*01  TRD+
+>TRDV3*01 0//0 TRDD3*01  [TRD+]
 atctctccagtaaggactgaagacagtgccacttactactgtgcctttag
 actgggggatacg
 CACAGTGCTACAAAACCTACAGAGACCTGTAC