tests: update

algo/tests/bugs/bug20141024.should-get

 !NO_LAUNCHER:
-!LAUNCH: valgrind --suppressions=gzstream_cpp.supp --suppressions=libstdc++_leak.supp --leak-check=full  $VIDJIL_DIR/$EXEC -c clones -d -g ../../../germline/homo-sapiens.g:IGH -z 2 -r 1 bug20141024.fa 2>&1
+!LAUNCH: valgrind --suppressions=gzstream_cpp.supp --suppressions=libstdc++_leak.supp --leak-check=full  $VIDJIL_DIR/$EXEC --clean-memory -c clones -d -g ../../../germline/homo-sapiens.g:IGH -z 2 -r 1 bug20141024.fa 2>&1
 !REQUIRES: which valgrind
 
 $ No invalid read with short sequences

algo/tests/should-get-tests/large-r.should-get

-!LAUNCH: (i=1; while [ $i -le 100000 ]; do echo '>read' ; echo ccgtgtattactgtgcgagagagctgaatacttccagcactg ; i=$((i+1)); done ;) > same-igh-100k.fa ; $LAUNCHER $VIDJIL_DIR/$EXEC $VIDJIL_DEFAULT_OPTIONS -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH -r 5000  -w 15  same-igh-100k.fa; rm -f same-igh-100k.fa
+!LAUNCH: (i=1; while [ $i -le 100000 ]; do echo '>read' ; echo ccgtgtattactgtgcgagagagctgaatacttccagcactg ; i=$((i+1)); done ;) > same-igh-100k.fa ; $LAUNCHER $VIDJIL_DIR/$EXEC $EXTRA $VIDJIL_DEFAULT_OPTIONS -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH -r 5000  -w 15  same-igh-100k.fa; rm -f same-igh-100k.fa
 
 $ Find a unique clone with all reads
 1:>clone-001--IGH--0100000--100.--window

algo/tests/should-get-tests/revcomp.should-get

-!LAUNCH: $LAUNCHER $VIDJIL_DIR/$EXEC $VIDJIL_DEFAULT_OPTIONS -k 9 -V $VIDJIL_DIR/germline/homo-sapiens/IGHV.fa -J $VIDJIL_DIR/germline/homo-sapiens/IGHJ.fa  -K -c clones $VIDJIL_DATA/revcomp.fa ; grep 'X.X.X' out/revcomp.affects | sed 's/[^X]//g'  | sort -u ; grep '#>'  out/revcomp.affects | sed 's/.*SEG.../e-value:/' | cut -f 1 -d' '
+!LAUNCH: $LAUNCHER $VIDJIL_DIR/$EXEC $EXTRA $VIDJIL_DEFAULT_OPTIONS -k 9 -V $VIDJIL_DIR/germline/homo-sapiens/IGHV.fa -J $VIDJIL_DIR/germline/homo-sapiens/IGHJ.fa  -K -c clones $VIDJIL_DATA/revcomp.fa ; grep 'X.X.X' out/revcomp.affects | sed 's/[^X]//g'  | sort -u ; grep '#>'  out/revcomp.affects | sed 's/.*SEG.../e-value:/' | cut -f 1 -d' '
 
 $ Segments both reads, normal and reverse
 1:junction detected in 2 reads

algo/tests/should-get-tests/stanford-germlines.should-get

-!LAUNCH: ($LAUNCHER $VIDJIL_DIR/$EXEC $VIDJIL_DEFAULT_OPTIONS -c germlines -g $VIDJIL_DIR/germline/homo-sapiens.g:TRA,TRB,TRD,TRG,IGH,IGK,IGL -t 100 -s '######-######' $VIDJIL_DATA/Stanford_S22.fasta)
+!LAUNCH: ($LAUNCHER $VIDJIL_DIR/$EXEC $EXTRA $VIDJIL_DEFAULT_OPTIONS -c germlines -g $VIDJIL_DIR/germline/homo-sapiens.g:TRA,TRB,TRD,TRG,IGH,IGK,IGL -t 100 -s '######-######' $VIDJIL_DATA/Stanford_S22.fasta)
 
 $ number of reads and kmers
 1:13153 reads, 3020179 kmers

algo/tests/should-get-tests/vidjil-help-advanced.should-get

@@ -17,4 +17,4 @@ $ Display advanced options
 : custom Cost
 
 $ Correct number of options
-B49:^  -
+B50:^  -