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vidjil
vidjil
Commits
54fe620f
Commit
54fe620f
authored
Nov 21, 2014
by
Marc Duez
Browse files
qunit : split test and data
parent
da7c5378
Changes
4
Expand all
Hide whitespace changes
Inline
Side-by-side
browser/test/QUnit/testFiles/data_test.js
0 → 100644
View file @
54fe620f
json_data
=
{
"
vidjil_json_version
"
:
[
"
2014.09
"
],
"
reads
"
:
{
"
segmented
"
:
[
200
,
100
,
200
,
100
],
"
total
"
:
[
200
,
100
,
200
,
100
],
"
germline
"
:
{
"
TRG
"
:
[
100
,
50
,
100
,
50
],
"
IGH
"
:
[
100
,
50
,
100
,
50
]
}
},
"
samples
"
:
{
"
timestamp
"
:
[
"
2014-10-20 13:59:02
"
,
"
2014-10-25 14:00:32
"
,
"
2014-11-20 14:03:13
"
,
"
2014-12-20 14:04:48
"
],
"
commandline
"
:
[
"
./vidjil -c clones -g germline/ -r 1 -o ./out0 -z 200 -n 5 Leu+0_BCD.cut.fa
"
,
"
./vidjil -c clones -g germline/ -r 1 -o ./out1 -z 200 -n 5 Leu+1_BCD.cut.fa
"
,
"
./vidjil -c clones -g germline/ -r 1 -o ./out2 -z 200 -n 5 Leu+2_BCD.cut.fa
"
,
"
./vidjil -c clones -g germline/ -r 1 -o ./out3 -z 200 -n 5 Leu+3_BCD.cut.fa
"
],
"
number
"
:
4
,
"
original_names
"
:
[
"
Leu+0_BCD.cut.fa
"
,
"
Leu+1_BCD.cut.fa
"
,
"
Leu+2_BCD.cut.fa
"
,
"
Leu+3_BCD.cut.fa
"
],
"
log
"
:
[
"
==> segmented 362296 reads (38.7%)
\n
==> found 11526 40-windows in 335725 segments (35.8%) inside 937164 sequences
\n
"
,
"
==> segmented 407095 reads (56.5%)
\n
==> found 35801 40-windows in 396776 segments (55.1%) inside 720531 sequences
\n
"
,
"
==> segmented 419506 reads (46.2%)
\n
==> found 19567 40-windows in 400435 segments (44.1%) inside 908909 sequences
\n
"
,
"
==> segmented 448435 reads (48.2%)
\n
==> found 43444 40-windows in 418595 segments (45%) inside 929901 sequences
\n
"
]
},
"
clones
"
:
[
{
"
sequence
"
:
"
aaaaaaaaaaaaaaaaaaaaa
"
,
"
name
"
:
"
test1
"
,
"
id
"
:
"
riri
"
,
"
reads
"
:
[
10
,
10
,
15
,
15
]
,
"
top
"
:
1
,
"
germline
"
:
"
TRG
"
,
},
{
"
sequence
"
:
"
bbbbbbbbbbbbbbb
"
,
"
name
"
:
"
test2
"
,
"
id
"
:
"
fifi
"
,
"
reads
"
:
[
20
,
20
,
10
,
10
]
,
"
top
"
:
2
,
"
germline
"
:
"
TRG
"
,
},
{
"
sequence
"
:
"
cccccccccccccccccccc
"
,
"
name
"
:
"
test3
"
,
"
id
"
:
"
loulou
"
,
"
reads
"
:
[
25
,
25
,
50
,
50
]
,
"
top
"
:
3
,
"
germline
"
:
"
IGH
"
,
}
]
}
\ No newline at end of file
browser/test/QUnit/testFiles/model_test.js
View file @
54fe620f
json_data
=
{
"
vidjil_json_version
"
:
[
"
2014.09
"
],
"
reads
"
:
{
"
segmented
"
:
[
200
,
100
,
200
,
100
],
"
total
"
:
[
200
,
100
,
200
,
100
],
"
germline
"
:
{
"
TRG
"
:
[
100
,
50
,
100
,
50
],
"
IGH
"
:
[
100
,
50
,
100
,
50
]
}
},
"
samples
"
:
{
"
timestamp
"
:
[
"
2014-10-20 13:59:02
"
,
"
2014-10-25 14:00:32
"
,
"
2014-11-20 14:03:13
"
,
"
2014-12-20 14:04:48
"
],
"
commandline
"
:
[
"
./vidjil -c clones -g germline/ -r 1 -o ./out0 -z 200 -n 5 Leu+0_BCD.cut.fa
"
,
"
./vidjil -c clones -g germline/ -r 1 -o ./out1 -z 200 -n 5 Leu+1_BCD.cut.fa
"
,
"
./vidjil -c clones -g germline/ -r 1 -o ./out2 -z 200 -n 5 Leu+2_BCD.cut.fa
"
,
"
./vidjil -c clones -g germline/ -r 1 -o ./out3 -z 200 -n 5 Leu+3_BCD.cut.fa
"
],
"
number
"
:
4
,
"
original_names
"
:
[
"
Leu+0_BCD.cut.fa
"
,
"
Leu+1_BCD.cut.fa
"
,
"
Leu+2_BCD.cut.fa
"
,
"
Leu+3_BCD.cut.fa
"
],
"
log
"
:
[
"
==> segmented 362296 reads (38.7%)
\n
==> found 11526 40-windows in 335725 segments (35.8%) inside 937164 sequences
\n
"
,
"
==> segmented 407095 reads (56.5%)
\n
==> found 35801 40-windows in 396776 segments (55.1%) inside 720531 sequences
\n
"
,
"
==> segmented 419506 reads (46.2%)
\n
==> found 19567 40-windows in 400435 segments (44.1%) inside 908909 sequences
\n
"
,
"
==> segmented 448435 reads (48.2%)
\n
==> found 43444 40-windows in 418595 segments (45%) inside 929901 sequences
\n
"
]
},
"
clones
"
:
[
{
"
sequence
"
:
"
aaaaaaaaaaaaaaaaaaaaa
"
,
"
name
"
:
"
test1
"
,
"
id
"
:
"
riri
"
,
"
reads
"
:
[
10
,
10
,
15
,
15
]
,
"
top
"
:
1
,
"
germline
"
:
"
TRG
"
,
},
{
"
sequence
"
:
"
bbbbbbbbbbbbbbb
"
,
"
name
"
:
"
test2
"
,
"
id
"
:
"
fifi
"
,
"
reads
"
:
[
20
,
20
,
10
,
10
]
,
"
top
"
:
2
,
"
germline
"
:
"
TRG
"
,
},
{
"
sequence
"
:
"
cccccccccccccccccccc
"
,
"
name
"
:
"
test3
"
,
"
id
"
:
"
loulou
"
,
"
reads
"
:
[
25
,
25
,
50
,
50
]
,
"
top
"
:
3
,
"
germline
"
:
"
IGH
"
,
}
]
}
var
myConsole
=
new
Com
(
"
flash_container
"
,
"
log_container
"
,
"
popup-container
"
,
"
data-container
"
)
var
m
=
new
Model
();
...
...
browser/test/QUnit/test_Qunit.html
View file @
54fe620f
...
...
@@ -39,6 +39,8 @@
<script
type=
"text/javascript"
src=
'../../js/database.js'
></script>
<script
type=
"text/javascript"
src=
'../../js/conf.js'
></script>
<script
type=
"text/javascript"
src=
'../../js/stats.js'
></script>
<script
type=
"text/javascript"
src=
"./testFiles/data_test.js"
></script>
</head>
<body>
<div
style=
"display:none"
>
...
...
browser/test/dataTest.js
deleted
100644 → 0
View file @
da7c5378
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