qunit : split test and data

browser/test/QUnit/testFiles/data_test.js

+json_data = {
+  "vidjil_json_version": ["2014.09"], 
+  "reads": {
+    "segmented": [200,100,200,100], 
+    "total": [200,100,200,100], 
+    "germline": {
+      "TRG": [100,50,100,50], 
+      "IGH": [100,50,100,50]
+    }
+  }, 
+  "samples": {
+    "timestamp": ["2014-10-20 13:59:02", "2014-10-25 14:00:32", "2014-11-20 14:03:13", "2014-12-20 14:04:48"], 
+    "commandline": [
+      "./vidjil -c clones -g germline/ -r 1 -o ./out0 -z 200 -n 5 Leu+0_BCD.cut.fa ", 
+      "./vidjil -c clones -g germline/ -r 1 -o ./out1 -z 200 -n 5 Leu+1_BCD.cut.fa ", 
+      "./vidjil -c clones -g germline/ -r 1 -o ./out2 -z 200 -n 5 Leu+2_BCD.cut.fa ", 
+      "./vidjil -c clones -g germline/ -r 1 -o ./out3 -z 200 -n 5 Leu+3_BCD.cut.fa "
+    ], 
+    "number": 4, 
+    "original_names": [
+      "Leu+0_BCD.cut.fa", 
+      "Leu+1_BCD.cut.fa", 
+      "Leu+2_BCD.cut.fa", 
+      "Leu+3_BCD.cut.fa"
+    ], 
+    "log": [
+      "  ==> segmented 362296 reads (38.7%)\n  ==> found 11526 40-windows in 335725 segments (35.8%) inside 937164 sequences\n ", 
+      "  ==> segmented 407095 reads (56.5%)\n  ==> found 35801 40-windows in 396776 segments (55.1%) inside 720531 sequences\n ", 
+      "  ==> segmented 419506 reads (46.2%)\n  ==> found 19567 40-windows in 400435 segments (44.1%) inside 908909 sequences\n ", 
+      "  ==> segmented 448435 reads (48.2%)\n  ==> found 43444 40-windows in 418595 segments (45%) inside 929901 sequences\n " 
+    ]
+  }, 
+  "clones": [
+    { 
+        "sequence" : "aaaaaaaaaaaaaaaaaaaaa",
+        "name" : "test1",
+        "id" : "riri",
+        "reads" : [10,10,15,15] ,
+        "top" : 1,
+        "germline" : "TRG",
+    },
+    { 
+        "sequence" : "bbbbbbbbbbbbbbb",
+        "name" : "test2",
+        "id" : "fifi",
+        "reads" : [20,20,10,10] ,
+        "top" : 2,
+        "germline" : "TRG",
+    },
+    { 
+        "sequence" : "cccccccccccccccccccc",
+        "name" : "test3",
+        "id" : "loulou",
+        "reads" : [25,25,50,50] ,
+        "top" : 3,
+        "germline" : "IGH",
+    }
+  ]
+}
\ No newline at end of file

browser/test/QUnit/testFiles/model_test.js

 
-
-json_data = {
-  "vidjil_json_version": ["2014.09"], 
-  "reads": {
-    "segmented": [200,100,200,100], 
-    "total": [200,100,200,100], 
-    "germline": {
-      "TRG": [100,50,100,50], 
-      "IGH": [100,50,100,50]
-    }
-  }, 
-  "samples": {
-    "timestamp": ["2014-10-20 13:59:02", "2014-10-25 14:00:32", "2014-11-20 14:03:13", "2014-12-20 14:04:48"], 
-    "commandline": [
-      "./vidjil -c clones -g germline/ -r 1 -o ./out0 -z 200 -n 5 Leu+0_BCD.cut.fa ", 
-      "./vidjil -c clones -g germline/ -r 1 -o ./out1 -z 200 -n 5 Leu+1_BCD.cut.fa ", 
-      "./vidjil -c clones -g germline/ -r 1 -o ./out2 -z 200 -n 5 Leu+2_BCD.cut.fa ", 
-      "./vidjil -c clones -g germline/ -r 1 -o ./out3 -z 200 -n 5 Leu+3_BCD.cut.fa "
-    ], 
-    "number": 4, 
-    "original_names": [
-      "Leu+0_BCD.cut.fa", 
-      "Leu+1_BCD.cut.fa", 
-      "Leu+2_BCD.cut.fa", 
-      "Leu+3_BCD.cut.fa"
-    ], 
-    "log": [
-      "  ==> segmented 362296 reads (38.7%)\n  ==> found 11526 40-windows in 335725 segments (35.8%) inside 937164 sequences\n ", 
-      "  ==> segmented 407095 reads (56.5%)\n  ==> found 35801 40-windows in 396776 segments (55.1%) inside 720531 sequences\n ", 
-      "  ==> segmented 419506 reads (46.2%)\n  ==> found 19567 40-windows in 400435 segments (44.1%) inside 908909 sequences\n ", 
-      "  ==> segmented 448435 reads (48.2%)\n  ==> found 43444 40-windows in 418595 segments (45%) inside 929901 sequences\n " 
-    ]
-  }, 
-  "clones": [
-    { 
-        "sequence" : "aaaaaaaaaaaaaaaaaaaaa",
-        "name" : "test1",
-        "id" : "riri",
-        "reads" : [10,10,15,15] ,
-        "top" : 1,
-        "germline" : "TRG",
-    },
-    { 
-        "sequence" : "bbbbbbbbbbbbbbb",
-        "name" : "test2",
-        "id" : "fifi",
-        "reads" : [20,20,10,10] ,
-        "top" : 2,
-        "germline" : "TRG",
-    },
-    { 
-        "sequence" : "cccccccccccccccccccc",
-        "name" : "test3",
-        "id" : "loulou",
-        "reads" : [25,25,50,50] ,
-        "top" : 3,
-        "germline" : "IGH",
-    }
-  ]
-}
-
 var myConsole = new Com("flash_container", "log_container", "popup-container", "data-container")
 
     var m = new Model();

browser/test/QUnit/test_Qunit.html

@@ -39,6 +39,8 @@
     <script type="text/javascript" src='../../js/database.js'></script>
     <script type="text/javascript" src='../../js/conf.js'></script>
     <script type="text/javascript" src='../../js/stats.js'></script>
+
+    <script type="text/javascript" src="./testFiles/data_test.js"></script>
 </head>
 <body>
     <div style="display:none">