Commit 53f512af authored by Mathieu Giraud's avatar Mathieu Giraud

doc/user.md: +/- concentration, reword, more details

parent 7f426d91
......@@ -130,12 +130,13 @@ then followed by the J gene `TRGJ1*02`, with `6` nucleotides deleted at its star
- Clones can be searched (“search” box) by either their name, their custom name,
their DNA sequence, their (partial) CDR3 amino acid sequence.
- The concentration of some clones may not be displayed. Instead you can have
either a `+` symbol or a `-` symbol. In the former case that means the clone has
been detected (positive) but in few reads (typically less than five). In the
latter case it means that the clone has not been detected (negative) in the
sample but has been detected in another sample that is not currently
displayed.
- The concentration of some clones may not be displayed.
- A clone with a plus symbol `+` has been detected in that sample,
but with only a few reads, typically less than five.
Its concentration ratio is thus not significant, and
this clone would appear in the gray zone in the ple graph.
- A clone with a minus symbol `−` has not been detected in that sample,
but has been detected in another sample that is not currently displayed.
### Detailed information on each clone
The “🛈” button opens a window showing detailed information (V(D)J designation,
......
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