Commit 5384348e authored by Mikaël Salson's avatar Mikaël Salson

Germline: We can have large N with TRG (it's rare)

We met the case in one patient in Lille (#123). We need to increase delta_max
in such a case.
parent f9f6d6f1
......@@ -134,7 +134,7 @@ void MultiGermline::build_default_set(string path)
// Should parse 'data/germlines.data'
Germline *germline;
germline = new Germline("TRG", 'G', path + "/TRGV.fa", "", path + "/TRGJ.fa", -10, 20);
germline = new Germline("TRG", 'G', path + "/TRGV.fa", "", path + "/TRGJ.fa", -10, 50);
germline->new_index("#####-#####");
germlines.push_back(germline);
......@@ -207,7 +207,7 @@ void MultiGermline::load_standard_set(string path)
{
germlines.push_back(new Germline("TRA", 'A', path + "/TRAV.fa", "", path + "/TRAJ.fa", -10, 20));
germlines.push_back(new Germline("TRB", 'B', path + "/TRBV.fa", path + "/TRBD.fa", path + "/TRBJ.fa", -10, 20));
germlines.push_back(new Germline("TRG", 'G', path + "/TRGV.fa", "", path + "/TRGJ.fa", -10, 20));
germlines.push_back(new Germline("TRG", 'G', path + "/TRGV.fa", "", path + "/TRGJ.fa", -10, 50));
germlines.push_back(new Germline("TRD", 'D', path + "/TRDV.fa", path + "/TRDD.fa", path + "/TRDJ.fa", 0, 80));
germlines.push_back(new Germline("IGH", 'H', path + "/IGHV.fa", path + "/IGHD.fa", path + "/IGHJ.fa", 0, 80));
......
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