Skip to content

GitLab

Commit 51a0c955 authored by Cyprien Borée's avatar Cyprien Borée Committed by Mikaël Salson
Browse files

Replace pair with two objects in testFilterBioReaderWithACAutomaton() 

For more informations see #3283.
parent 7fd47cfb
Show whitespace changes
Inline Side-by-side
algo/tests/unit-tests/testFilter.cpp
View file @ 51a0c955
...@@ -255,7 +255,8 @@ void testAutomatonBuilderFilteringBioReader(){ ...@@ -255,7 +255,8 @@ void testAutomatonBuilderFilteringBioReader(){
} }
void testFilterBioReaderWithACAutomaton(){ void testFilterBioReaderWithACAutomaton(){
pair<vector<int>*, AbstractACAutomaton<KmerAffect>*> *pair1, *pair2, *pair3; vector<int> *v1, *v2, *v3;
AbstractACAutomaton<KmerAffect> *a1, *a2, *a3;
KmerAffect tmpKmer; KmerAffect tmpKmer;
seqtype sequence1, sequence2, sequence3; seqtype sequence1, sequence2, sequence3;
BioReader testedBioReader1, testedBioReader2, testedBioReader3; BioReader testedBioReader1, testedBioReader2, testedBioReader3;
...@@ -280,9 +281,12 @@ void testFilterBioReaderWithACAutomaton(){ ...@@ -280,9 +281,12 @@ void testFilterBioReaderWithACAutomaton(){
f1 = new FilterWithACAutomaton(testedBioReader1, "####"); f1 = new FilterWithACAutomaton(testedBioReader1, "####");
f2 = new FilterWithACAutomaton(testedBioReader2, "####"); f2 = new FilterWithACAutomaton(testedBioReader2, "####");
f3 = new FilterWithACAutomaton(testedBioReader3, "####"); f3 = new FilterWithACAutomaton(testedBioReader3, "####");
pair1 = f1->getPair(); v1 = f1->getIndexes();
pair2 = f2->getPair(); v2 = f2->getIndexes();
pair3 = f3->getPair(); v3 = f3->getIndexes();
a1 = f1->getAutomaton();
a2 = f2->getAutomaton();
a3 = f3->getAutomaton();
filteredBioReader1 = f1->filterBioReaderWithACAutomaton(testedBioReader1, sequence1); filteredBioReader1 = f1->filterBioReaderWithACAutomaton(testedBioReader1, sequence1);
filteredBioReader2 = f2->filterBioReaderWithACAutomaton(testedBioReader2, sequence2); filteredBioReader2 = f2->filterBioReaderWithACAutomaton(testedBioReader2, sequence2);
...@@ -297,8 +301,7 @@ void testFilterBioReaderWithACAutomaton(){ ...@@ -297,8 +301,7 @@ void testFilterBioReaderWithACAutomaton(){
TEST_FILTER_BIOREADER_WITH_AC_AUTOMATON, SIZE_ERROR); TEST_FILTER_BIOREADER_WITH_AC_AUTOMATON, SIZE_ERROR);
//check filtered BioReaders content //check filtered BioReaders content
vector<int>* v1 = pair1->first; map<KmerAffect, int> m1 = a1->getMultiResults(sequence1);
map<KmerAffect, int> m1 = pair1->second->getMultiResults(sequence1);
list<Sequence> l1 = filteredBioReader1.getAll(); list<Sequence> l1 = filteredBioReader1.getAll();
for(auto const m : m1){ for(auto const m : m1){
KmerAffect tmpKmer = m.first; KmerAffect tmpKmer = m.first;
...@@ -311,8 +314,7 @@ void testFilterBioReaderWithACAutomaton(){ ...@@ -311,8 +314,7 @@ void testFilterBioReaderWithACAutomaton(){
TEST_FILTER_BIOREADER_WITH_AC_AUTOMATON, GENES_ERROR); TEST_FILTER_BIOREADER_WITH_AC_AUTOMATON, GENES_ERROR);
} }
} }
vector<int>* v2 = pair2->first; map<KmerAffect, int> m2 = a2->getMultiResults(sequence2);
map<KmerAffect, int> m2 = pair2->second->getMultiResults(sequence2);
list<Sequence> l2 = filteredBioReader2.getAll(); list<Sequence> l2 = filteredBioReader2.getAll();
for(auto const m : m2){ for(auto const m : m2){
KmerAffect tmpKmer = m.first; KmerAffect tmpKmer = m.first;
...@@ -325,8 +327,7 @@ void testFilterBioReaderWithACAutomaton(){ ...@@ -325,8 +327,7 @@ void testFilterBioReaderWithACAutomaton(){
TEST_FILTER_BIOREADER_WITH_AC_AUTOMATON, GENES_ERROR); TEST_FILTER_BIOREADER_WITH_AC_AUTOMATON, GENES_ERROR);
} }
} }
vector<int>* v3 = pair3->first; map<KmerAffect, int> m3 = a3->getMultiResults(sequence3);
map<KmerAffect, int> m3 = pair3->second->getMultiResults(sequence3);
list<Sequence> l3 = filteredBioReader3.getAll(); list<Sequence> l3 = filteredBioReader3.getAll();
for(auto const m : m3){ for(auto const m : m3){
KmerAffect tmpKmer = m.first; KmerAffect tmpKmer = m.first;
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment