Commit 4d0da3d4 authored by Mikaël Salson's avatar Mikaël Salson
Browse files

task.py: grep-reads needs to have clone files produced

Clone files are not produced anymore to save space
parent 9a18ecd7
......@@ -253,7 +253,7 @@ def run_vidjil(id_file, id_config, id_data, grep_reads,
if grep_reads:
# TODO: security, assert grep_reads XXXX
vidjil_cmd += ' --grep-reads "%s" ' % grep_reads
vidjil_cmd += ' --out-clone-files --grep-reads "%s" ' % grep_reads
os.makedirs(out_folder)
out_log = out_folder+'/'+output_filename+'.vidjil.log'
......
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