Commit 4bd2e72c authored by Mathieu Giraud's avatar Mathieu Giraud

germline/get-germline: gets from IMGT all genes, not only those inframe

Note that we should also keep inframeP, which has gaps.
See #3515.
parent 005d00b0
...@@ -2,9 +2,11 @@ ...@@ -2,9 +2,11 @@
cd $(dirname $0) cd $(dirname $0)
wget -N wget -N
wget -N wget -N
wget -N
errors=$(tempfile) errors=$(tempfile)
python IMGTGENEDB-ReferenceSequences.fasta-nt-WithGaps-F+ORF+inframeP IMGTGENEDB-GeneList 2> $errors python IMGTGENEDB-ReferenceSequences.fasta-nt-WithGaps-F+ORF+inframeP IMGTGENEDB-ReferenceSequences.fasta-nt-WithoutGaps-F+ORF+allP IMGTGENEDB-GeneList 2> $errors
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