Commit 4a294bb0 authored by Mikaël Salson's avatar Mikaël Salson

Merge branch 'feature-a/release' into 'dev'

vidjil-algo: release 2020.04

See merge request !674
parents 6dd6c7ac 0546afcc
Pipeline #141269 passed with stage
in 9 seconds
......@@ -182,8 +182,10 @@ void Germline::new_index(IndexTypes type)
void Germline::set_index(IKmerStore<KmerAffect> *_index)
{
index = _index;
index->refs++ ;
if (index != _index) {
index = _index;
index->refs++ ;
}
}
......
This changelog concerns vijil-algo, the algorithmic part (C++) of the Vidjil platform.
2020-04-29 The Vidjil Team
* New --gz option to output compressed files #4253 #4269 #4270
* Improved seed framework, with different seeds on V/D/J parts. Analysis will be improved in further releases #3954
* Bugs closed (missing affectations #4225, crash in rare cases #4263)
* New Docker framework for tests on multiple compilers #4203
* New and updated tests
2020-01-24 The Vidjil Team
* Improved e-value estimation, -e is now the global e-value, new advanced option --e-value-kmer
Sequences on larger datasets will now be better analyzed #3594 !538
......
# vidjil-algo 2020.01
# vidjil-algo 2020.04
**Command-line manual**
*The Vidjil team (Mathieu, Mikaël, Aurélien, Florian, Marc, Tatiana and Rayan)*
```
Vidjil -- High-throughput Analysis of V(D)J Immune Repertoire -- [[http://www.vidjil.org]]
Copyright (C) 2011-2019 by Bonsai bioinformatics
Copyright (C) 2011-2020 by Bonsai bioinformatics
at CRIStAL (UMR CNRS 9189, Université Lille) and Inria Lille
and VidjilNet consortium.
contact@vidjil.org
......
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