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vidjil
vidjil
Commits
4902c30e
Commit
4902c30e
authored
Jan 24, 2020
by
Mikaël Salson
Committed by
Mathieu Giraud
Jan 24, 2020
Browse files
no-output.should: Add missing `$LAUNCHER` and `$EXTRA`
See
!589
parent
4fba0336
Changes
1
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algo/tests/should-get-tests/no-output.should
View file @
4902c30e
...
...
@@ -9,12 +9,12 @@ $ There are no clones in the .vidjil
0:"id"
!LAUNCH: rm out/Stanford_S22.tsv ; $VIDJIL_DIR/$EXEC -z 0 -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/Stanford_S22.fasta > /dev/null ; touch out/Stanford_S22.tsv ; cat out/Stanford_S22.tsv
!LAUNCH: rm out/Stanford_S22.tsv ;
$LAUNCHER
$VIDJIL_DIR/$EXEC
$EXTRA
-z 0 -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/Stanford_S22.fasta > /dev/null ; touch out/Stanford_S22.tsv ; cat out/Stanford_S22.tsv
$ The AIRR .tsv file has four lines
4:
!LAUNCH: rm out/Stanford_S22.tsv ; $VIDJIL_DIR/$EXEC --no-airr -z 0 -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/Stanford_S22.fasta > /dev/null ; touch out/Stanford_S22.tsv ; cat out/Stanford_S22.tsv
!LAUNCH: rm out/Stanford_S22.tsv ;
$LAUNCHER
$VIDJIL_DIR/$EXEC
$EXTRA
--no-airr -z 0 -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/Stanford_S22.fasta > /dev/null ; touch out/Stanford_S22.tsv ; cat out/Stanford_S22.tsv
$ No AIRR .tsv file
0:
\ No newline at end of file
Mathieu Giraud
@magiraud
mentioned in merge request
!589 (merged)
·
Jan 24, 2020
mentioned in merge request
!589 (merged)
mentioned in merge request !589
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