doc: recombinations

doc/algo.org

@@ -173,7 +173,7 @@ You can run the tests with the following commands:
 
 #+BEGIN_SRC sh
 make data
-   # get IGH rearrangements from a single individual, as described in:
+   # get IGH recombinations from a single individual, as described in:
    # Boyd, S. D., and al. Individual variation in the germline Ig gene
    # repertoire inferred from variable region gene rearrangements. J
    # Immunol, 184(12), 6986–92.

doc/browser.org

@@ -26,7 +26,7 @@ The Vidjil browser runs in any modern browser. It has been successfully tested o
 ** The .vidjil files
 
 The vidjil browser displays =.vidjil= files that summarize the V(D)J
-rearrangements and the sequences found in a run. 
+recombinations and the sequences found in a run. 
 
 The easiest way to get these files is to [[http://rbx.vidjil.org/browser][request an account]] on the Vidjil server.
 You will then be able to upload,
@@ -129,7 +129,7 @@ The time graph is hidden with there is only one timepoint.
   
 To further analyze a set of clones sharing a same V and J, it is often useful
 to focus on the clones, then to display them ones according to either their “clone length”
-or their “N length” (that is N1-D-N2 in the case of VDJ rearrangements)
+or their “N length” (that is N1-D-N2 in the case of VDJ recombinations)
 
 ** The aligner (bottom panel)