Skip to content
GitLab
Projects
Groups
Snippets
Help
Loading...
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
vidjil
Project overview
Project overview
Details
Activity
Releases
Repository
Repository
Files
Commits
Branches
Tags
Contributors
Graph
Compare
Issues
1,712
Issues
1,712
List
Boards
Labels
Service Desk
Milestones
Merge Requests
87
Merge Requests
87
CI / CD
CI / CD
Pipelines
Jobs
Schedules
Operations
Operations
Incidents
Environments
Packages & Registries
Packages & Registries
Container Registry
Analytics
Analytics
CI / CD
Repository
Value Stream
Snippets
Snippets
Members
Members
Collapse sidebar
Close sidebar
Activity
Graph
Create a new issue
Jobs
Commits
Issue Boards
Open sidebar
vidjil
vidjil
Commits
47968b3e
Commit
47968b3e
authored
Mar 10, 2015
by
Mikaël Salson
Browse files
Options
Browse Files
Download
Email Patches
Plain Diff
pedantic: Remove unused variables/declarations
parent
01d65bc7
Changes
2
Hide whitespace changes
Inline
Side-by-side
Showing
2 changed files
with
0 additions
and
8 deletions
+0
-8
algo/core/cluster-junctions.cpp
algo/core/cluster-junctions.cpp
+0
-4
algo/core/germline.cpp
algo/core/germline.cpp
+0
-4
No files found.
algo/core/cluster-junctions.cpp
View file @
47968b3e
...
...
@@ -40,8 +40,6 @@ void comp_matrix::compare(ostream &out, Cost cluster_cost)
// DEBUG // out << " DEBUT COMPARE JUNCTION" << endl ;
// clock_t start = clock();
typedef
map
<
junction
,
list
<
Sequence
>
>
mjs
;
Cost
compareCost
=
cluster_cost
;
out
<<
" Using cost "
<<
compareCost
<<
endl
;
...
...
@@ -124,8 +122,6 @@ list<list<junction> > comp_matrix::cluster(string forced_edges, int w, ostream
// out << " eps: " << epsilon << " / minPts: " << minPts << endl ;
typedef
map
<
junction
,
list
<
Sequence
>
>
mjs
;
map
<
string
,
map
<
string
,
bool
>
>
graph
;
////////////////////////
...
...
algo/core/germline.cpp
View file @
47968b3e
...
...
@@ -170,8 +170,6 @@ void MultiGermline::add_germline(Germline *germline, string seed)
void
MultiGermline
::
build_default_set
(
string
path
)
{
// Should parse 'data/germlines.data'
Germline
*
germline
;
add_germline
(
new
Germline
(
"TRA"
,
'A'
,
path
+
"/TRAV.fa"
,
""
,
path
+
"/TRAJ.fa"
,
-
10
,
20
),
SEED_S13
);
add_germline
(
new
Germline
(
"TRB"
,
'B'
,
path
+
"/TRBV.fa"
,
path
+
"/TRBD.fa"
,
path
+
"/TRBJ.fa"
,
0
,
80
),
SEED_S12
);
add_germline
(
new
Germline
(
"TRG"
,
'G'
,
path
+
"/TRGV.fa"
,
""
,
path
+
"/TRGJ.fa"
,
-
10
,
30
),
SEED_S10
);
...
...
@@ -185,8 +183,6 @@ void MultiGermline::build_default_set(string path)
void
MultiGermline
::
build_incomplete_set
(
string
path
)
{
// Should parse 'data/germlines.data'
Germline
*
germline
;
// VdJa
add_germline
(
new
Germline
(
"VdJa"
,
'a'
,
path
+
"/TRDV.fa"
,
path
+
"/TRDD.fa"
,
path
+
"/TRAJ.fa"
,
-
10
,
80
),
SEED_S13
);
...
...
Write
Preview
Markdown
is supported
0%
Try again
or
attach a new file
.
Attach a file
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment