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vidjil
vidjil
Commits
447496a7
Commit
447496a7
authored
Mar 28, 2014
by
Mathieu Giraud
Browse files
vidjil.cpp: clarify -s/-k relationship in help message
parent
9e068cde
Changes
1
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algo/vidjil.cpp
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447496a7
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@@ -145,10 +145,14 @@ void usage(char *progname)
<<
"Window prediction"
<<
endl
#ifndef NO_SPACED_SEEDS
<<
" (use either -s or -k option, but not both)"
<<
endl
<<
" -s <string> spaced seed used for the V/J affectation"
<<
endl
<<
" (default: #####-#####, ######-######, #######-#######, depends on germline)"
<<
endl
#endif
<<
" -k <int> k-mer size used for the V/J affectation (default: 10, 12, 13, depends on germline)"
<<
endl
#ifndef NO_SPACED_SEEDS
<<
" (using -k option is equivalent to set with -s a contiguous seed with only '#' characters)"
<<
endl
#endif
<<
" -w <int> w-mer size used for the length of the extracted window (default: "
<<
DEFAULT_W
<<
")(default with -d: "
<<
DEFAULT_W_D
<<
")"
<<
endl
<<
endl
...
...
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