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vidjil
vidjil
Commits
4455193e
Commit
4455193e
authored
Mar 03, 2017
by
Mathieu Giraud
Browse files
tests: add test
Fixes
#2211
.
parent
001637c2
Changes
1
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Inline
Side-by-side
algo/tests/should-get-tests/multi-segment.should-get
0 → 100644
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4455193e
!LAUNCH: $VIDJIL_DIR/vidjil -c segment $VIDJIL_DEFAULT_OPTIONS -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH,IGK,IGL $VIDJIL_DIR/data/multi-complete.fa ; cat out/multi-complete.vidjil | python $VIDJIL_DIR/tools/format_json.py -1
$ Segment the Ig recombinations
1:IGH SEG
1:IGK SEG
1:IGL SEG
$ Do not segment the TR recombinations
4:TR.* UNSEG
$ Report the unsegmented sequences in the json output
1: "germline": "zzz", "id": "TRA
1: "germline": "zzz", "id": "TRB
1: "germline": "zzz", "id": "TRG
1: "germline": "zzz", "id": "TRD
$ Count the unsegmented sequences in the json output
1: "zzz": .4.
$ Count the segmented sequences in the json output
1: "segmented": .3.
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