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Commit 42dfd8c9 authored by Mathieu Giraud's avatar Mathieu Giraud
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repseq_vdj.py: actual IgReC output has also one locus field

parent a4366d74
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    algo/tests/repseq_vdj.py
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    ......@@ -102,7 +102,7 @@ class Result(VDJ_Formatter):
    ### IgReC
    IGREC_LABELS = [
    'Read id',
    'Read id', 'locus',
    'V id', 'V start', 'V end', 'V score',
    'J id', 'J start', 'J end', 'J score',
    ]
    ......@@ -110,7 +110,7 @@ IGREC_LABELS = [
    class IgReC_Result(Result):
    r'''
    >>> lig = '\t'.join(['blabli4577', 'TRBV13*02', '1', '164', '0.58156', 'TRBJ1-5*01', '319', '367', '0.94'])
    >>> lig = '\t'.join(['blabli4577', 'TRB', 'TRBV13*02', '1', '164', '0.58156', 'TRBJ1-5*01', '319', '367', '0.94'])
    >>> r = IgReC_Result(lig)
    >>> r['Read id']
    ......
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