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vidjil
vidjil
Commits
42dfd8c9
Commit
42dfd8c9
authored
Jul 10, 2019
by
Mathieu Giraud
Browse files
repseq_vdj.py: actual IgReC output has also one locus field
parent
a4366d74
Pipeline
#86455
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in 5 seconds
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algo/tests/repseq_vdj.py
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42dfd8c9
...
...
@@ -102,7 +102,7 @@ class Result(VDJ_Formatter):
### IgReC
IGREC_LABELS
=
[
'Read id'
,
'Read id'
,
'locus'
,
'V id'
,
'V start'
,
'V end'
,
'V score'
,
'J id'
,
'J start'
,
'J end'
,
'J score'
,
]
...
...
@@ -110,7 +110,7 @@ IGREC_LABELS = [
class
IgReC_Result
(
Result
):
r
'''
>>> lig = '\t'.join(['blabli4577', 'TRBV13*02', '1', '164', '0.58156', 'TRBJ1-5*01', '319', '367', '0.94'])
>>> lig = '\t'.join(['blabli4577',
'TRB',
'TRBV13*02', '1', '164', '0.58156', 'TRBJ1-5*01', '319', '367', '0.94'])
>>> r = IgReC_Result(lig)
>>> r['Read id']
...
...
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