repseq_vdj.py: actual IgReC output has also one locus field

42dfd8c9 · Mathieu Giraud · a4366d74 · 42dfd8c9
Commit 42dfd8c9 authored Jul 10, 2019 by Mathieu Giraud
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algo/tests/repseq_vdj.py algo/tests/repseq_vdj.py +2 -2

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--- a/algo/tests/repseq_vdj.py
+++ b/algo/tests/repseq_vdj.py
@@ -102,7 +102,7 @@ class Result(VDJ_Formatter):
 ### IgReC

 IGREC_LABELS = [
-  'Read id',
+  'Read id', 'locus',
  'V id', 'V start', 'V end', 'V score',
  'J id', 'J start', 'J end', 'J score',
 ]
@@ -110,7 +110,7 @@ IGREC_LABELS = [
 class IgReC_Result(Result):

    r'''
-    >>> lig = '\t'.join(['blabli4577', 'TRBV13*02', '1', '164', '0.58156', 'TRBJ1-5*01', '319', '367', '0.94'])
+    >>> lig = '\t'.join(['blabli4577', 'TRB', 'TRBV13*02', '1', '164', '0.58156', 'TRBJ1-5*01', '319', '367', '0.94'])
    >>> r = IgReC_Result(lig)

    >>> r['Read id']