Commit 42da780d authored by Mathieu Giraud's avatar Mathieu Giraud
Browse files

windowExtractor.cpp: display kmer affect for segmented sequences

parent da4ddb37
......@@ -33,6 +33,7 @@ WindowsStorage *WindowExtractor::extract(OnlineFasta *reads, IKmerStore<KmerAffe
if (out_segmented)
*out_segmented << seg ; // KmerSegmenter output (V/N/J)
*out_segmented << seg.getKmerAffectAnalyser()->toString() << endl;
} else if (out_unsegmented) {
*out_unsegmented << reads->getSequence();
*out_unsegmented << "#" << segmented_mesg[seg.getSegmentationStatus()] << endl;
......
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