Commit 4155cd40 authored by Mathieu Giraud's avatar Mathieu Giraud

core/segment.h: AlignBox, clean

parent ce0e3d9b
......@@ -96,9 +96,20 @@ class AlignBox
string key;
string color;
int del_left;
* Alignment positions *on the read*
int start;
int end;
int marked_pos; // Marked position, for Cys104 and Phe118/Trp118
* Alignment positions *compared to reference sequence*
int del_left;
int del_right;
AlignBox(string key = "", string color="");
......@@ -132,9 +143,6 @@ class AlignBox
string ref_label;
string ref;
/* Marked position, for Cys104 and Phe118/Trp118 */
int marked_pos;
/* Scores and identifiers of other possible reference sequence */
vector<pair<int, int> > score;
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