should-vdj: BRI_TRB, sequences to be further worked out

3ff57228 · Mathieu Giraud · ae4557bf · 3ff57228
Commit 3ff57228 authored Apr 21, 2016 by Mathieu Giraud
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algo/tests/should-vdj-tests/BRI_TRB.should-vdj.fa algo/tests/should-vdj-tests/BRI_TRB.should-vdj.fa +6 -4

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--- a/algo/tests/should-vdj-tests/BRI_TRB.should-vdj.fa
+++ b/algo/tests/should-vdj-tests/BRI_TRB.should-vdj.fa
@@ -7,18 +7,20 @@ ggctcacggttacaggtaag


 #target 0447GG
->TRBD2*02 1/AATG/0 TRBJ2-3*01 [TRB]
+>TRBD2*02 1/AATG/0 TRBJ2-3*01 [TRB]  BUG
 CAGGGCTGAGCGAACACCGGGGAGCTGTTTTTTGGAGAAGGCTCTAGGCTGACCGTACTGGGTAAGGAGGCG
 GTTGGGGCTCCGGAGAGCTCCGAGAGGGCGGGATGGGCAGAGGTAAGCAGCTGCCCCACTCTGAGAGGGGCT
 GTGCTGAGAGGTTTTTCCAAGCCCCACACAGTCAGACTAACCTCTGCCACCTGCGCTTCCTGCCGCTGCCCA
 GTGGTTGGGGGAGGGGGACTAGCAGGGAGGAAACATTTTTGTATCATGGTGTAACATTGTGGGGACTAGCGG
-GAGGAATGAGCACAGATACGCAGTATTTTGGCCCAGGCACCCGGCTGACAGTGCTCGGTAAGCGGGGGCTCC
+GAGG
+AATG
+AGCACAGATACGCAGTATTTTGGCCCAGGCACCCGGCTGACAGTGCTCGGTAAGCGGGGGCTCC
 CGCTGAAGCCCCGGAACTGGGGAGGGGGCGCCCCGGGACGCCGGGGGCGTCGCAGGGCCAGTTTCTGTGCCT
 T


 #target 0465MB
->TRBD1*01 3/ATCCCG/0 TRBD2 4/0/4 TRBJ2-5*01 [TRB]
+>TRBD1*01 3/ATCCCG/0 TRBD2 4/0/4 TRBJ2-5*01 [TRB]  TODO
 GCCAAACAGCCTTACAAAGACATCCAGCTCTAAGGAGCTCAAAACATCCTGAGGACAGTGCCTGGAGGTGAG
 AAGGAAGCCCCCGGCCTGGTCCATACCCCACCACCAACTTGCATAATGGGGGGTGATGTCACCCACCCTCCA
 CTCCCCTCAAAGGAGCAGCTGCTCTGGTGGTCTCTCCCAGGCTCTGGGGGCGGACCCATGGGAGGGGCTGTT
@@ -27,7 +29,7 @@ AGGCACGCGGCTCCTGGTGCTCGGTGTGCGCG


 #target 0639HA
->TRBV21-1*01 5/CGGGACTCCCCC/0 TRBD2*02 0/CCGGGGG/9 TRBJ2-7*01 [TRB]
+>TRBV21-1*01 5/CGGGACTCCCCC/0 TRBD2*02 0/CCGGGGG/9 TRBJ2-7*01 [TRB]  TODO
 AGAACTTATTCAGAAAGCAGAAATAATCAATGAGCGATTTTTAGCCCAATGCTCCAAAAACTCATCCTGTAC
 CTTGGAGATCCAGTCCACGGAGTCAGGGGACACAGCACTGTATTTCTGTGCCAGCAGCCGGGACTCCCCCGG
 GACTAGCGGGAGGGCCGGGGGGCAGTACTTCGGGCCGGGCACCAGGCTCACGGTTACAGGTAAG