tests: testing -V/-D/-J and -s explicit options

3cf5b0ce · Mathieu Giraud · 0c28aeb4 · 3cf5b0ce
Commit 3cf5b0ce authored Nov 05, 2014 by Mathieu Giraud
--- a/algo/tests/stanford.should_get
+++ b/algo/tests/stanford.should_get
-!LAUNCH: ../../vidjil -G ../../germline/IGH -d ../../data/Stanford_S22.fasta
-!LOG: stanford.log
+!LAUNCH: ../../vidjil -V ../../germline/IGHV.fa -D ../../germline/IGHD.fa -J ../../germline/IGHJ.fa -d -s \\\\#\\\\#\\\\#\\\\#\\\\#\\\\#-\\\\#\\\\#\\\\#\\\\#\\\\#\\\\# ../../data/Stanford_S22.fasta

 $ Parses IGHV.fa germline
 f1: 99341 bp in 341 sequences