sample_set* implement filters

Previously patient and run lists has filtering. Generic sample_sets now
have filtering too.

server/web2py/applications/vidjil/controllers/sample_set.py

@@ -212,7 +212,7 @@ def all():
     if "filter" not in request.vars :
         request.vars["filter"] = ""
 
-
+    result = helper.filter(request.vars['filter'], result)
     log.debug("run list (%.3fs) %s" % (time.time()-start, request.vars["filter"]))
 
 

server/web2py/applications/vidjil/models/SampleSet.py

@@ -65,3 +65,8 @@ class SampleSet(object):
                 &(db[self.type].id == data.id)
                 &(db.results_file.sequence_file_id == db.sequence_file.id)).count()
         return data.data_count
+
+    def filter(self, filter_str, data):
+        for row in data:
+            row['string'] = [row['name'], row['confs'], row['groups'], str(row['info'])]
+        return filter(lambda row : vidjil_utils.advanced_filter(row['string'], filter_str), data)

server/web2py/applications/vidjil/models/patient.py

@@ -13,3 +13,8 @@ class Patient(SampleSet):
 
     def get_birth(self, data):
         return "%s" % str(data.birth) if data.birth is not None else ''
+
+    def filter(self, filter_str, data):
+        for row in data:
+            row['string'] = [row['last_name'], row['first_name'], row['confs'], row['groups'], str(row['birth']), str(row['info'])]
+        return filter(lambda row : vidjil_utils.advanced_filter(row['string'], filter_str), data)

server/web2py/applications/vidjil/models/run.py

@@ -15,3 +15,8 @@ class Run(SampleSet):
 
     def get_run_date(self, data):
         return data.run_date
+
+    def filter(self, filter_str, data):
+        for row in data:
+            row['string'] = [row['name'], row['confs'], row['groups'], str(row['run_date']), str(row['info'])]
+        return filter(lambda row : vidjil_utils.advanced_filter(row['string'], filter_str), data)

server/web2py/applications/vidjil/models/sample_set_list.py

@@ -66,6 +66,7 @@ class SampleSetList():
 
         for key, row in self.elements.iteritems():
             row.most_used_conf = max(set(row.conf_id_list), key=row.conf_id_list.count)
+            row.confs = ", ".join(list(set(map(lambda elem: elem['name'], row.conf_list)))) 
 
     def load_permitted_groups(self):
         query = db(

server/web2py/applications/vidjil/views/sample_set/all.html

@@ -8,7 +8,7 @@
 <div class="db_block">
     <div class="db_block_left">
         search
-        <input id="db_filter_input" type="text" value="{{=request.vars["filter"]}}"  onchange="db.call('sample_set/list', {'filter' : this.value} )">
+        <input id="db_filter_input" type="text" value="{{=request.vars["filter"]}}"  onchange="db.call('sample_set/all', {'type': '{{=type}}', 'filter' : this.value} )">
     </div>
 </div>