From 3c0a193b66f56a06e9cf5caaa231c1e46e468490 Mon Sep 17 00:00:00 2001
From: flothoni <--help>
Date: Fri, 20 Nov 2020 17:47:37 +0100
Subject: [PATCH] testing data; reformating vidjil file (multiple lines) Link
 to #4566

---
 tools/tests/data/warnings/w81_sample_1.vidjil |  2 +-
 tools/tests/data/warnings/w81_sample_2.vidjil | 27 ++++++++++++++++++-
 2 files changed, 27 insertions(+), 2 deletions(-)

diff --git a/tools/tests/data/warnings/w81_sample_1.vidjil b/tools/tests/data/warnings/w81_sample_1.vidjil
index 50da23c14..9fc32c15d 100644
--- a/tools/tests/data/warnings/w81_sample_1.vidjil
+++ b/tools/tests/data/warnings/w81_sample_1.vidjil
@@ -1,10 +1,10 @@
 {
+    "notes": "Sample with clone 1 and 3;", 
     "clones": [
         {"germline": "IGK", "id": "clone_1", "name": "clone_name_1", "reads": [500], "top": 1}, 
         {"germline": "IGK", "id": "clone_3", "name": "clone_name_3", "reads": [500], "top": 2}], 
     "clusters": [],
     "germlines": {}, 
-    "notes": "Sample with clone 1 and 3;", 
     "producer": "vidjil fuse", 
     "reads": {"germline": {"IGK": [9500]}, "segmented": [9500], "total": [9500]}, 
     "samples": {
diff --git a/tools/tests/data/warnings/w81_sample_2.vidjil b/tools/tests/data/warnings/w81_sample_2.vidjil
index 41a2a88c5..a410440ed 100644
--- a/tools/tests/data/warnings/w81_sample_2.vidjil
+++ b/tools/tests/data/warnings/w81_sample_2.vidjil
@@ -1 +1,26 @@
-{"clones": [{"germline": "IGK", "id": "clone_1", "name": "clone_name_1", "reads": [500], "top": 1}, {"germline": "IGK", "id": "clone_2", "name": "clone_name_2", "reads": [500], "top": 2}, {"germline": "IGK", "id": "clone_3", "name": "clone_name_3b", "reads": [500], "top": 3}], "clusters": [], "germlines": {}, "notes": "Sample with clone 1-3; clone 3 have a variation in his name", "producer": "vidjil fuse", "reads": {"germline": {"IGK": [9500]}, "segmented": [9500], "total": [9500]}, "samples": {"commandline": ["cmdline_2"], "log": ["log_2"], "number": 1, "original_names": ["seq_2"], "producer": ["vidjil-algo 2018.02"], "run_timestamp": ["2018-03-28 10:26:11"], "timestamp": ["2018-04-06 13:48:48"]}, "timestamp": "2019-04-08 15:18:00", "vidjil_json_version": "2016b", "warn": []}
+{
+  "notes": "Sample with clone 1-3; clone 3 have a variation in his name",
+  "clones": [
+    {"germline": "IGK", "id": "clone_1", "name": "clone_name_1", "reads": [500 ], "top": 1 },
+    {"germline": "IGK", "id": "clone_2", "name": "clone_name_2", "reads": [500 ], "top": 2 },
+    {"germline": "IGK", "id": "clone_3", "name": "clone_name_3b", "reads": [500 ], "top": 3 }
+  ],
+  "clusters": [],
+  "germlines": {},
+  "producer": "vidjil fuse",
+  "reads": {
+    "germline": {"IGK": [9500 ] }, "segmented": [9500 ], "total": [9500 ]
+  },
+  "samples": {
+    "commandline": ["cmdline_2"],
+    "log": ["log_2"],
+    "number": 1,
+    "original_names": ["seq_2"],
+    "producer": ["vidjil-algo 2018.02"],
+    "run_timestamp": ["2018-03-28 10:26:11"],
+    "timestamp": ["2018-04-06 13:48:48"]
+  },
+  "timestamp": "2019-04-08 15:18:00",
+  "vidjil_json_version": "2016b",
+  "warn": []
+}
\ No newline at end of file
-- 
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