Commit 3c0a193b authored by flothoni's avatar flothoni

testing data; reformating vidjil file (multiple lines)

Link to #4566
parent 32929ea7
Pipeline #188652 passed with stages
in 11 seconds
{
"notes": "Sample with clone 1 and 3;",
"clones": [
{"germline": "IGK", "id": "clone_1", "name": "clone_name_1", "reads": [500], "top": 1},
{"germline": "IGK", "id": "clone_3", "name": "clone_name_3", "reads": [500], "top": 2}],
"clusters": [],
"germlines": {},
"notes": "Sample with clone 1 and 3;",
"producer": "vidjil fuse",
"reads": {"germline": {"IGK": [9500]}, "segmented": [9500], "total": [9500]},
"samples": {
......
{"clones": [{"germline": "IGK", "id": "clone_1", "name": "clone_name_1", "reads": [500], "top": 1}, {"germline": "IGK", "id": "clone_2", "name": "clone_name_2", "reads": [500], "top": 2}, {"germline": "IGK", "id": "clone_3", "name": "clone_name_3b", "reads": [500], "top": 3}], "clusters": [], "germlines": {}, "notes": "Sample with clone 1-3; clone 3 have a variation in his name", "producer": "vidjil fuse", "reads": {"germline": {"IGK": [9500]}, "segmented": [9500], "total": [9500]}, "samples": {"commandline": ["cmdline_2"], "log": ["log_2"], "number": 1, "original_names": ["seq_2"], "producer": ["vidjil-algo 2018.02"], "run_timestamp": ["2018-03-28 10:26:11"], "timestamp": ["2018-04-06 13:48:48"]}, "timestamp": "2019-04-08 15:18:00", "vidjil_json_version": "2016b", "warn": []}
{
"notes": "Sample with clone 1-3; clone 3 have a variation in his name",
"clones": [
{"germline": "IGK", "id": "clone_1", "name": "clone_name_1", "reads": [500 ], "top": 1 },
{"germline": "IGK", "id": "clone_2", "name": "clone_name_2", "reads": [500 ], "top": 2 },
{"germline": "IGK", "id": "clone_3", "name": "clone_name_3b", "reads": [500 ], "top": 3 }
],
"clusters": [],
"germlines": {},
"producer": "vidjil fuse",
"reads": {
"germline": {"IGK": [9500 ] }, "segmented": [9500 ], "total": [9500 ]
},
"samples": {
"commandline": ["cmdline_2"],
"log": ["log_2"],
"number": 1,
"original_names": ["seq_2"],
"producer": ["vidjil-algo 2018.02"],
"run_timestamp": ["2018-03-28 10:26:11"],
"timestamp": ["2018-04-06 13:48:48"]
},
"timestamp": "2019-04-08 15:18:00",
"vidjil_json_version": "2016b",
"warn": []
}
\ No newline at end of file
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