germline.cpp: seed for incomplete DD2-DD3 rearrangements has to be short

The sequence TRDD2-01 is only 9 bp.

germline.cpp: seed for incomplete DD2-DD3 rearrangements has to be short
The sequence TRDD2-01 is only 9 bp.
3b37a335 · Mathieu Giraud · d2a0dbd5 · 3b37a335
Commit 3b37a335 authored Dec 03, 2014 by Mathieu Giraud
--- a/algo/core/germline.cpp
+++ b/algo/core/germline.cpp
@@ -179,13 +179,13 @@ void MultiGermline::build_incomplete_set(string path)

  // DD2-DD3
  germline = new Germline("TRD+", 'd', path + "/TRDD2-01.fa", "", path + "/TRDJ.fa",   -10, 20);
-  germline->new_index("#####-#####");
+  germline->new_index("#########");
  germlines.push_back(germline);
  germline = new Germline("TRD+", 'd', path + "/TRDV.fa", "", path + "/TRDD3-01.fa",   -10, 20);
-  germline->new_index("#####-#####");
+  germline->new_index("#########");
  germlines.push_back(germline);
  germline = new Germline("TRD+", 'd', path + "/TRDD2-01.fa", "", path + "/TRDD3-01.fa",  -10, 20);
-  germline->new_index("#####-#####");
+  germline->new_index("#########");
  germlines.push_back(germline);