Commit 3b0c7af6 authored by Mikaël Salson's avatar Mikaël Salson
Browse files

clones: getAverageReadLength()

Return the average read length of the clone. Note that this parameter is
not mandatory and may be undefined. Also note that Vidjil defines it
only for the top clones.
parent e334705f
......@@ -83,6 +83,16 @@ Clone.prototype = {
REGEX_GENE: /(IGH|IGK|IGL|TRA|TRB|TRG|TRD)([\w-*]*)$/, // IGHV3-11*03
REGEX_GENE_IGNORE_ALLELE: /(IGH|IGK|IGL|TRA|TRB|TRG|TRD)([\w-]*)[\w-*]*$/, // IGHV3-11*03 (ignore *03)
getAverageReadLength: function(time) {
if (this._average_read_length == 'undefined')
return 'undefined';
time = this.m.getTime(time);
var size = this._average_read_length[time];
if (size == 0)
return 'undefined';
return size;
},
getShortName: function () {
name_items = this.getName().split(' ')
......
......@@ -130,6 +130,10 @@ function ScatterPlot(id, model, database) {
label: "clone consensus length",
fct: function(cloneID) {return self.m.clone(cloneID).getSequenceLength()}
},
"readLength" : {
label: "clone average read length",
fct: function(cloneID) {return self.m.clone(cloneID).getAverageReadLength()}
},
"GCContent" : {
label: "GC content",
fct: "GCContent",
......
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