Commit 3906ded1 authored by Mathieu Giraud's avatar Mathieu Giraud
Browse files

tests: update

parent 0555195d
......@@ -4,7 +4,7 @@
# Test examples embedded in 'doc/algo.org'
# Run eight times
8:vidjil-algo -- V.D.J recombinations analysis
8:vidjil-algo -- V.D.J recombinations analysis .*vidjil.org
# '-c clone' (or implied), five times
5: end of clones
......
!LAUNCH: $VIDJIL_DIR/$EXEC $VIDJIL_DEFAULT_OPTIONS -f '1, 2, 3, 4, 5'
!LAUNCH: $VIDJIL_DIR/$EXEC $VIDJIL_DEFAULT_OPTIONS -f '1, 2, 3, 4, 5' $VIDJIL_DATA/Stanford_S22.fasta
!EXIT_CODE: 1
$Check that correct custom cost is used
......
!LAUNCH: $VIDJIL_DIR/$EXEC $VIDJIL_DEFAULT_OPTIONS -g $VIDJIL_DIR/germline/Makefile 2>&1
!LAUNCH: $VIDJIL_DIR/$EXEC $VIDJIL_DEFAULT_OPTIONS -g $VIDJIL_DIR/germline/Makefile $VIDJIL_DATA/Stanford_S22.fasta 2>&1
!EXIT_CODE: 1
$ Error, incorrect *.g
......
!NO_LAUNCHER:
!LAUNCH: $VIDJIL_DIR/$EXEC $VIDJIL_DEFAULT_OPTIONS 2>&1
!LAUNCH: $VIDJIL_DIR/$EXEC $VIDJIL_DEFAULT_OPTIONS $VIDJIL_DATA/Stanford_S22.fasta 2>&1
!EXIT_CODE: 1
$ Error, no germlines
......
......@@ -9,6 +9,6 @@ $ Check default costs
1:clustering .* "1, -4, -4, 0, 0"
$ Display advanced options
: Experimental options
: , experimental options
: custom Cost
......@@ -11,5 +11,5 @@ $ Check default filtering options
1: =100 .* maximal number of clones to be analyzed
$ Do not display advanced options
0: Experimental options
0: , experimental options
0: custom Cost
\ No newline at end of file
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