Nous avons procédé ce jeudi matin 08 avril 2021 à une MAJ de sécurité urgente. Nous sommes passé de la version 13.9.3 à la version 13.9.5 les releases notes correspondantes sont ici:

Commit 38108d2f authored by Mathieu Giraud's avatar Mathieu Giraud

Merge branch 'feature-a/fuse-y-z' into 'dev'

tests: fuse after -y/-z

See merge request !934
parents 7113d43e f587fa97
Pipeline #233734 failed with stages
in 1 minute and 6 seconds
!REQUIRES: python $VIDJIL_DIR/tools/
!OUTPUT_FILE: out/y2z0-y2z1.vidjil
!OPTIONS: --mod jR
!LAUNCH: $VIDJIL_DIR/$EXEC -b y2z0 -r1 -x3 -y2 -z0 -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/Stanford_S22.fasta ; $VIDJIL_DIR/$EXEC -b y2z1 -r1 -x3 -y2 -z1 -g $VIDJIL_DIR/germline/homo-sapiens.g:IGH $VIDJIL_DATA/Stanford_S22.fasta ; python $VIDJIL_DIR/tools/ out/y2z0.vidjil out/y2z1.vidjil -o out/y2z0-y2z1.vidjil
$ Points list
:samples.original_names[0]: data//Stanford_S22.fasta
:samples.original_names[1]: data//Stanford_S22.fasta
$ First clone (-z 1)
:clones[0]._average_read_length[0]: 233
:clones[0]._average_read_length[1]: 233
:clones[0].seg.evalue.val: 1.17e-95
# See #3970 and !784: now fuse keeps the best 'top' or otherwise the first sequence
f:clones[0] IGHV1-3
$ Second clone
:clones[1]._average_read_length[0]: 243
:clones[1]._average_read_length[1]: 243
:clones[1].seg.evalue.val: 5.92e-97
$ Third clone (-y 2, no consensus)
:clones[2].sequence: 0
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