algo/tests/bugs: Change parameters following new syntax for germlines

See #2147 for change in parameter syntax and #1618 for
algo/tests/bugs

algo/tests/bugs/bug20130617.should-get

-!LAUNCH: ../../../vidjil -c clones -G ../../../germline/TRG -r 1 bug20130617.fa
+!LAUNCH: ../../../vidjil -c clones -g ../../../germline/homo-sapiens.g:TRG -r 1 bug20130617.fa
 
 
 $ Bug with J deletion being 122

algo/tests/bugs/bug20131218.should-get

-!LAUNCH: ../../../vidjil -c segment -G ../../../germline/IGH bug20131218.fa
+!LAUNCH: ../../../vidjil -c segment -g ../../../germline/homo-sapiens.g:IGH bug20131218.fa
 
 # The number of deletions in the D is larger than the D length itself.
 $ Bug with the number of deletions in the D.

algo/tests/bugs/bug20141024.should-get

-!LAUNCH: valgrind --leak-check=full ../../../vidjil -c clones -d -G ../../../germline/IGH -z 2 -r 1 bug20141024.fa 2>&1
+!LAUNCH: valgrind --leak-check=full ../../../vidjil -c clones -d -g ../../../germline/homo-sapiens.g:IGH -z 2 -r 1 bug20141024.fa 2>&1
 !REQUIRES: which valgrind
 
 $ No invalid read with short sequences

algo/tests/bugs/bug20150604.should-get

-!LAUNCH: ../../../vidjil -KA -k 16 -z 0 -G ../../../germline/IGH bug20150604.fa
+!LAUNCH: ../../../vidjil -KA -k 16 -z 0 -g ../../../germline/homo-sapiens.g:IGH bug20150604.fa
 
 $ Bug on some architectures, not segmented
 1: junction detected in 1 reads

algo/tests/bugs/bug20150629.should-get

-!LAUNCH: ../../../vidjil -c clones -r 1 -G ../../../germline/IGH bug20150629.fa >/dev/null && python ../../../tools/format_json.py out/bug20150629.vidjil| grep '\\"name\\"'
+!LAUNCH: ../../../vidjil -c clones -r 1 -g ../../../germline/homo-sapiens.g:IGH bug20150629.fa >/dev/null && python ../../../tools/format_json.py out/bug20150629.vidjil| grep '\\"name\\"'
 
 $ The sequence is not segmented
 0:IGHV

algo/tests/bugs/bug20160121.should-get

-!LAUNCH: ../../../vidjil -s '#####-#####' -c clones -r 1 -G ../../../germline/IGH -t 0 -e 1 bug20160121.fa
+!LAUNCH: ../../../vidjil -s '#####-#####' -c clones -r 1 -g ../../../germline/homo-sapiens.g:IGH -t 0 -e 1 bug20160121.fa
 
 $ Sequences should not be segmented since they only contain J.
 1:UNSEG only J/3' -> 2