Commit 378b74b2 authored by Mikaël Salson's avatar Mikaël Salson Committed by Mathieu Giraud

lazy_msa: Use affine cost for MSA

parent 85792f59
......@@ -28,7 +28,7 @@ void LazyMsa::add(string sequence){
sequences[sizeUsed]=sequence;
DynProg::DynProgMode dpMode = DynProg::GlobalButMostlyLocal ;
Cost dpCost = VDJ;
Cost dpCost = VDJaffine;
DynProg dp = DynProg(ref, sequence, dpMode, dpCost);
dp.compute();
......
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