Commit 36d76499 authored by Mathieu Giraud's avatar Mathieu Giraud

should-get-tests: 2 tests, reword to avoid shell problems on some platforms

See #3197.
parent b940042c
!NO_LAUNCHER:
!LAUNCH: (cd $VIDJIL_DIR/germline ; md5sum {homo-sapiens,mus-musculus,rattus-norvegicus}/*.fa || md5 -r {homo-sapiens,mus-musculus,rattus-norvegicus}/*.fa)
!LAUNCH: (cd $VIDJIL_DIR/germline ; md5sum */*.fa || md5 -r */*.fa)
$ Check md5 in germline/, sequences split and processed from germline and other databases
1:b64be21f03b290c6850ce2cb2f1d6f02 homo-sapiens/IGHD.fa
......
!LAUNCH: ../../tools/vdj_assign - $VIDJIL_DIR/germline/homo-sapiens/IGH V J "IGHV3-15*01" "IGHJ4*02" <<< "CCGAGGACACAGCCGTGTATTTTTTCCCCTAGTGGTTGCCCCTTTGACTACTGGGGCCAGGGAACC"
!LAUNCH: echo "CCGAGGACACAGCCGTGTATTTTTTCCCCTAGTGGTTGCCCCTTTGACTACTGGGGCCAGGGAACC" | ../../tools/vdj_assign - $VIDJIL_DIR/germline/homo-sapiens/IGH V J "IGHV3-15*01" "IGHJ4*02"
$ Compute correct coordinates
1: read .* 1 .* 60
......
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