remove useless constant and include in filter.h

In order to refactor the filter file into a class, the useless constants and
include were removed from the file.

For more informations about the refacotr see #3283.

algo/core/filter.h

 #ifndef FILTER_H
 #define FILTER_H
-#include <climits> //for UINT_MAX in filterBioReader
 #include "bioreader.hpp"
 #include "automaton.hpp"
 
-/*
-  This number is used in filterBioReaderWithACAutomaton to define
-  the minimum number of occurence that genes must have to be in the
-  filtered BioReader.
-*/
-#define BIOREADER_MIN 3
-
-/*
-  The number of required genes that must be greater or equal to BIOREADER_MIN
-  to filter a BioReader.
-*/
-#define REQUIRED_GOOD_GENES 1
-
 /*
   This function will filter a BioReader
   @param idxAho:  A pointer to a pair containing an int vector pointer and