move data/ to algo/tests/data/

See #2611. We move everything, and will see later if things should stay in data/.

move data/ to algo/tests/data/
See #2611. We move everything, and will see later if things should stay in data/.
35525c10 · Mathieu Giraud · c8afd2d8 · 35525c10 · 35525c10 · 35525c10
Commit 35525c10 authored Sep 13, 2017 by Mathieu Giraud
63 changed files
--- a/data/Makefile
+++ b/data/Makefile
--- a/data/Stanford_S22.label
+++ b/data/Stanford_S22.label
--- a/data/ambiguous_representative.fa
+++ b/data/ambiguous_representative.fa
--- a/data/analysis-with-windows.analysis
+++ b/data/analysis-with-windows.analysis
--- a/data/bug-revcomp.fa
+++ b/data/bug-revcomp.fa
--- a/data/bug-segment-overlap.fa
+++ b/data/bug-segment-overlap.fa
--- a/data/buggy-D.fa
+++ b/data/buggy-D.fa
--- a/data/cdr3-stopcodon.fa
+++ b/data/cdr3-stopcodon.fa
--- a/data/chimera-fake-D.fa
+++ b/data/chimera-fake-D.fa
--- a/data/chimera-fake-VJ.fa
+++ b/data/chimera-fake-VJ.fa
--- a/data/chimera-fake-VJ.g
+++ b/data/chimera-fake-VJ.g
--- a/data/chimera-fake-half.fa
+++ b/data/chimera-fake-half.fa
--- a/data/chimera-fake.fa
+++ b/data/chimera-fake.fa
--- a/data/chimera-trg.fa
+++ b/data/chimera-trg.fa
--- a/data/clones_simul
+++ b/data/clones_simul
--- a/data/clones_simul.fa
+++ b/data/clones_simul.fa
--- a/data/clones_simul.fa.base
+++ b/data/clones_simul.fa.base
--- a/data/clones_simul.fa.gz
+++ b/data/clones_simul.fa.gz
--- a/data/common-V-D.fa
+++ b/data/common-V-D.fa
--- a/data/example_mouse.fa
+++ b/data/example_mouse.fa
--- a/data/get-sequences
+++ b/data/get-sequences
--- a/data/isotypes.fa
+++ b/data/isotypes.fa
--- a/data/large_N.fa
+++ b/data/large_N.fa
--- a/data/long-segmentation.fa
+++ b/data/long-segmentation.fa
--- a/data/malformed1.fq
+++ b/data/malformed1.fq
--- a/data/malformed2.fq
+++ b/data/malformed2.fq
--- a/data/malformed3.fq
+++ b/data/malformed3.fq
--- a/data/malformed4.fq
+++ b/data/malformed4.fq
--- a/data/malformed5.fq
+++ b/data/malformed5.fq
--- a/data/malformed6.fq
+++ b/data/malformed6.fq
--- a/data/malformed7.fq
+++ b/data/malformed7.fq
--- a/data/msa.fa
+++ b/data/msa.fa
--- a/data/msa2.fa
+++ b/data/msa2.fa
--- a/data/msa3.fa
+++ b/data/msa3.fa
--- a/data/multi-complete.fa
+++ b/data/multi-complete.fa
--- a/data/multi-short.fa
+++ b/data/multi-short.fa
--- a/data/multi-tiny.fa
+++ b/data/multi-tiny.fa
--- a/data/no-cdr3.fa
+++ b/data/no-cdr3.fa
--- a/data/no_clones.vidjil
+++ b/data/no_clones.vidjil
--- a/data/overlap-d-j.fa
+++ b/data/overlap-d-j.fa
--- a/data/representative.fq
+++ b/data/representative.fq
--- a/data/representative_revcomp.fq
+++ b/data/representative_revcomp.fq
--- a/data/results-two-clones-1-2.vidjil
+++ b/data/results-two-clones-1-2.vidjil
--- a/data/results-two-clones-1-3.vidjil
+++ b/data/results-two-clones-1-3.vidjil
--- a/data/revcomp-VdJa.fa
+++ b/data/revcomp-VdJa.fa
--- a/data/revcomp.fa
+++ b/data/revcomp.fa
--- a/data/segment_S22.fa
+++ b/data/segment_S22.fa
--- a/data/segment_lec.fa
+++ b/data/segment_lec.fa
--- a/data/segment_lec.fq
+++ b/data/segment_lec.fq
--- a/data/segment_simul.fa
+++ b/data/segment_simul.fa
--- a/data/segmentation-2.fa
+++ b/data/segmentation-2.fa
--- a/data/segmentation.fasta
+++ b/data/segmentation.fasta
--- a/data/small_J.fa
+++ b/data/small_J.fa
--- a/data/small_V.fa
+++ b/data/small_V.fa
--- a/data/test1.bam
+++ b/data/test1.bam
--- a/data/test1.fa
+++ b/data/test1.fa
--- a/data/test1.fq
+++ b/data/test1.fq
--- a/data/testMarks.fa
+++ b/data/testMarks.fa
--- a/data/test_representatives.fa
+++ b/data/test_representatives.fa
--- a/data/toy_J.fa
+++ b/data/toy_J.fa
--- a/data/toy_V.fa
+++ b/data/toy_V.fa
--- a/data/trb-only-VJ.fa
+++ b/data/trb-only-VJ.fa
--- a/data/trd-dd2-dd3.fa
+++ b/data/trd-dd2-dd3.fa