Mise à jour terminée. Pour connaître les apports de la version 13.8.4 par rapport à notre ancienne version vous pouvez lire les "Release Notes" suivantes :
https://about.gitlab.com/releases/2021/02/11/security-release-gitlab-13-8-4-released/
https://about.gitlab.com/releases/2021/02/05/gitlab-13-8-3-released/

Commit 351d768f authored by Mathieu Giraud's avatar Mathieu Giraud

core/segment.cpp: MAX12, display revcomp sequence when it was detected on negative strand

parent 2d7de72d
......@@ -640,11 +640,17 @@ FineSegmenter::FineSegmenter(Sequence seq, Germline *germline, Cost segment_c)
KmerSegmenter *kseg = new KmerSegmenter(seq, germline, THRESHOLD_NB_EXPECTED, 1);
if (kseg->isSegmented() && (!strcmp(germline->code.c_str(), PSEUDO_GERMLINE_MAX12)))
{
reversed = kseg->isReverse();
KmerAffect left = reversed ? KmerAffect(kseg->after, true) : kseg->before ;
KmerAffect right = reversed ? KmerAffect(kseg->before, true) : kseg->after ;
code_short = "Unexpected ";
code_short += kseg->before.toStringSigns() + germline->index->getLabel(kseg->before);
code_short += left.toStringSigns() + germline->index->getLabel(left);
code_short += "/";
code_short += kseg->after.toStringSigns() + germline->index->getLabel(kseg->after);
info_extra += " " + kseg->before.toString() + "/" + kseg->after.toString() + " (" + code_short + ")";
code_short += right.toStringSigns() + germline->index->getLabel(right);
info_extra += " " + left.toString() + "/" + right.toString() + " (" + code_short + ")";
}
return ;
}
......
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