include demo files for upload functional tests

.gitlab-ci.yml

@@ -245,6 +245,7 @@ test_server_functional:
     - docker build --no-cache --build-arg git_branch=$CI_COMMIT_REF_NAME --build-arg build_env=TEST -t "vidjil/server:test" docker/vidjil-server
     - docker build --no-cache --build-arg git_branch=$CI_COMMIT_REF_NAME --build-arg build_env=TEST -t "vidjil/client:test" docker/vidjil-client
     - cd docker && docker-compose up -d && cd ..
+    - docker exec docker_nginx_1 sed -i "s/^\(FILE_SOURCE .*\)/FILE_SOURCE = '\/usr\/share\/vidjil\/demo'/" /usr/share/vidjil/server/web2py/applications/vidjil/modules/defs.py
     - docker exec docker_nginx_1 make -C /usr/share/vidjil browser
     - docker exec docker_uwsgi_1 python /usr/share/vidjil/server/web2py/web2py.py -S vidjil -M -R /usr/share/vidjil/server/web2py/applications/vidjil/tests/functional/init_test_db.py
     - source /etc/profile.d/rvm.sh

docker/vidjil-server/conf/defs.py

@@ -70,7 +70,7 @@ SCHEDULER_HEARTBEAT = 5
 
 # Directory to search for files
 FILE_SOURCE = '/mnt/data/src'
-FILE_TYPES = ['fasta', 'fastq', 'fastq.gz']
+FILE_TYPES = ['fasta', 'fastq', 'fastq.gz', 'fa']
 
 SET_TYPE_PATIENT = 'patient'
 SET_TYPE_RUN= 'run'

server/web2py/applications/vidjil/tests/functional/test_003_sample.rb

@@ -54,7 +54,7 @@ class TestSampleSet < BrowserTest
     for i in 0..num_additional_files
       $b.div(:id => "jstree_field_%d" % i).span(:text => "browse").click
       assert(jstree.visible?)
-      jstree_file = jstree.a(:id => "//Demo-X5.fasta_anchor")
+      jstree_file = jstree.a(:id => "//Demo-X5.fa_anchor")
       unless jstree_file.present? and jstree_file.present?
         jstree.a(:id => "/_anchor").double_click
       end