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vidjil
vidjil
Commits
3122900f
Commit
3122900f
authored
May 06, 2020
by
Mathieu Giraud
Browse files
benchmark-releases.py: keep column ordering
closes
#4282
parent
1660322a
Changes
1
Hide whitespace changes
Inline
Side-by-side
algo/tests/benchmark-releases.py
View file @
3122900f
...
...
@@ -23,18 +23,20 @@ CONSENSUS_NO = '-y 0 -z 0 '
CONSENSUS_ALL
=
'-y all -z 0 '
DESIGNATIONS
=
'-c designations '
BENCHS
=
{
'init'
:
'-x 1 '
+
MULTI
+
L4
+
CONSENSUS_NO
,
'germ'
:
LIMIT1e5
+
MULTI
+
L4
+
'-c germlines '
,
'multi-0'
:
LIMIT1e5
+
MULTI
+
L4
+
CONSENSUS_NO
,
'multi-1'
:
LIMIT1e5
+
MULTI
+
L4
+
CONSENSUS_ALL
,
'multi-a'
:
LIMIT1e3
+
MULTI
+
L4
+
DESIGNATIONS
+
'-z 1000'
,
'igh-0'
:
LIMIT1e5
+
IGH
+
S22
+
CONSENSUS_NO
,
'igh-1'
:
LIMIT1e5
+
IGH
+
S22
+
CONSENSUS_ALL
,
'igh-a'
:
LIMIT1e3
+
IGH
+
S22
+
DESIGNATIONS
,
}
from
collections
import
OrderedDict
BENCHS
=
OrderedDict
([
(
'init'
,
'-x 1 '
+
MULTI
+
L4
+
CONSENSUS_NO
),
(
'germ'
,
LIMIT1e5
+
MULTI
+
L4
+
'-c germlines '
),
(
'multi-0'
,
LIMIT1e5
+
MULTI
+
L4
+
CONSENSUS_NO
),
(
'multi-1'
,
LIMIT1e5
+
MULTI
+
L4
+
CONSENSUS_ALL
),
(
'multi-a'
,
LIMIT1e3
+
MULTI
+
L4
+
DESIGNATIONS
+
'-z 1000'
),
(
'igh-0'
,
LIMIT1e5
+
IGH
+
S22
+
CONSENSUS_NO
),
(
'igh-1'
,
LIMIT1e5
+
IGH
+
S22
+
CONSENSUS_ALL
),
(
'igh-a'
,
LIMIT1e3
+
IGH
+
S22
+
DESIGNATIONS
),
])
COMPATIBILITY
=
[
(
'2019.03'
,
'-c designations'
,
'-c segment'
),
...
...
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