*The Vidjil team (Mathieu, Mikaël, Aurélien, Florian, Marc, Ryan and Tatiana)*
**[Vidjil](http://www.vidjil.org) is an open-source platform for the analysis of high-throughput
sequencing data from lymphocytes.**[V(D)J recombinations](http://en.wikipedia.org/wiki/V\(D\)J_recombination) in lymphocytes are
essential for immunological diversity. They are also useful markers of
pathologies, and in leukemia, are used to quantify the minimal residual
disease during patient follow-up. High-throughput sequencing (NGS/HTS) now
enables the deep sequencing of a lymphoid population with dedicated [Rep-Seq](http://omictools.com/rep-seq-c424-p1.html)
methods and software.
### Web application, user documentation
- Tutorial "Mastering the Vidjil web application": [english](./tutorial/mastering-vidjil.html)([pdf](./tutorial/mastering-vidjil.pdf)), [français](./tutorial/mastering-vidjil-fr.html)
([pdf](./tutorial/mastering-vidjil-fr.pdf)). Start by this tutorial to have an overview of Vidjil.
- Web application [user manual](user.md)
-[Demo access](http://app.vidjil.org/) to the patient, experiment and sample server
[[http://www.vidjil.org][Vidjil]] is an open-source platform for the analysis of high-throughput
sequencing data from lymphocytes. [[http://en.wikipedia.org/wiki/V(D)J_recombination][V(D)J recombinations]] in lymphocytes are
essential for immunological diversity. They are also useful markers of
pathologies, and in leukemia, are used to quantify the minimal residual
disease during patient follow-up. High-throughput sequencing (NGS/HTS) now
enables the deep sequencing of a lymphoid population with dedicated [[http://omictools.com/rep-seq-c424-p1.html][Rep-Seq]]
methods and software.
** Web application, user documentation
:PROPERTIES:
:CUSTOM_ID: web-application-user-documentation
:END:
- Tutorial "Mastering the Vidjil web application": [[./tutorial/mastering-vidjil.html][english]] ([[./tutorial/mastering-vidjil.pdf][pdf]]), [[./tutorial/mastering-vidjil-fr.html][français]]
([[./tutorial/mastering-vidjil-fr.pdf][pdf]]). Start by this tutorial to have an overview of Vidjil.
- Web application [[./user.html][user manual]]
- [[http://app.vidjil.org/][Demo access]] to the patient, experiment and sample server