Commit 2fe3a661 authored by Mathieu Giraud's avatar Mathieu Giraud
Browse files

vidjil.cpp: '-U' may be a very useful option with RNA-Seq.

We should document that more.
parent 929a9f5b
......@@ -227,7 +227,7 @@ void usage(char *progname, bool advanced)
<< " -C <string> use custom Cost for automatic clustering : format \"match, subst, indels, homo, del_end\" (default "<<Cluster<<" )"<< endl
<< endl ;
cerr << "Detailed output per read (not recommended, large files)" << endl
cerr << "Detailed output per read (generally not recommended, large files, but may be used for filtering)" << endl
<< " -U output segmented reads (in " << SEGMENTED_FILENAME << " file)" << endl
<< " -u output unsegmented reads (in " << UNSEGMENTED_FILENAME << " file)" << endl
<< " -uu output unsegmented reads, gathered by unsegmentation cause (in *" << UNSEGMENTED_DETAIL_FILENAME << " files)" << endl
......
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