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vidjil
vidjil
Commits
2d02d1b1
Commit
2d02d1b1
authored
Dec 16, 2014
by
Marc Duez
Browse files
Merge branch 'master' of
git+ssh://scm.gforge.inria.fr//gitroot/vidjil/vidjil
parents
25a65b77
8b53b47c
Changes
2
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Inline
Side-by-side
algo/core/segment.cpp
View file @
2d02d1b1
...
...
@@ -142,6 +142,7 @@ ostream &operator<<(ostream &out, const Segmenter &s)
out
<<
">"
<<
s
.
label
<<
" "
;
out
<<
(
s
.
segmented
?
""
:
"! "
)
<<
s
.
info
;
out
<<
" "
<<
s
.
info_extra
;
out
<<
" "
<<
s
.
segmented_germline
->
code
;
out
<<
endl
;
if
(
s
.
segmented
)
...
...
@@ -461,7 +462,7 @@ string format_del(int deletions)
FineSegmenter
::
FineSegmenter
(
Sequence
seq
,
Germline
*
germline
,
Cost
segment_c
)
{
segmented_germline
=
germline
;
info_extra
=
""
;
label
=
seq
.
label
;
sequence
=
seq
.
sequence
;
...
...
algo/core/segment.h
View file @
2d02d1b1
...
...
@@ -53,6 +53,7 @@ protected:
bool
finishSegmentationD
();
public:
Germline
*
segmented_germline
;
string
code
;
string
code_short
;
string
code_light
;
...
...
@@ -140,8 +141,6 @@ class KmerSegmenter : public Segmenter
string
affects
;
public:
Germline
*
segmented_germline
;
/**
* Build a segmenter based on KmerSegmentation
* @param seq: An object read from a FASTA/FASTQ file
...
...
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