Commit 2ade70be authored by Mathieu Giraud's avatar Mathieu Giraud

tests: testing multi-germline segmentation, with -i

Same tests than multi-{complete,short}.should_get, but this time with -i.
Testing for incomplete rearrangements should not prevent the 7 reads
from being recognized in the right (complete) system.
parent 3c181cf9
!LAUNCH: ../../vidjil -g ../../germline -i ../../data/multi-complete.fa
$ Segment all the seven reads
1:segmented 7 reads
$ Segment one read on TRA
1:TRA .* -> .* 1
$ Segment one read on TRB
1:TRB .* -> .* 1
$ Segment one read on TRG
1:TRG .* -> .* 1
$ Segment one read on TRD
1:TRD .* -> .* 1
$ Segment one read on IGH
1:IGH .* -> .* 1
$ Segment one read on IGK
1:IGK .* -> .* 1
$ Segment one read on IGL
1:IGL .* -> .* 1
!LAUNCH: ../../vidjil -g ../../germline -i ../../data/multi-short.fa
$ Segment all the seven reads
1:segmented 7 reads
$ Segment one read on TRA
1:TRA .* -> .* 1
$ Segment one read on TRB
1:TRB .* -> .* 1
$ Segment one read on TRG
1:TRG .* -> .* 1
$ Segment one read on TRD
1:TRD .* -> .* 1
$ Segment one read on IGH
1:IGH .* -> .* 1
$ Segment one read on IGK
1:IGK .* -> .* 1
$ Segment one read on IGL
1:IGL .* -> .* 1
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