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vidjil
vidjil
Commits
294ae521
Commit
294ae521
authored
Jul 11, 2016
by
Mathieu Giraud
Browse files
doc/format-analysis.org, vidjil.cpp, fuse.py: bump .json format to 2016b
Incompatible changes are the numerical values in
parent
1d8b517d
Changes
3
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algo/vidjil.cpp
View file @
294ae521
...
...
@@ -64,7 +64,7 @@
// GIT_VERSION should be defined in "git-version.h", created by "create-git-version-h.sh", to be used outside of releases
#include "git-version.h"
#define VIDJIL_JSON_VERSION "2016
a
"
#define VIDJIL_JSON_VERSION "2016
b
"
//$$ #define (mainly default options)
...
...
doc/format-analysis.org
View file @
294ae521
#+TITLE: Encoding clones with V(D)J recombinations (2016
a
)
#+TITLE: Encoding clones with V(D)J recombinations (2016
b
)
#+AUTHOR: The Vidjil team
#+HTML_HEAD: <link rel="stylesheet" type="text/css" href="../css/org-mode.css" />
...
...
@@ -47,7 +47,7 @@ or =clusters=, to further cluster some clones, see below).
{
"producer": "program xyz version xyz",
"timestamp": "2014-10-01 12:00:11",
"vidjil_json_version": "2016
a
",
"vidjil_json_version": "2016
b
",
"samples": {
"number": 1,
...
...
@@ -94,7 +94,7 @@ do a correct gathering.
{
"producer": "program xyz version xyz / fuse.py version xyz",
"timestamp": "2014-10-01 14:00:11",
"vidjil_json_version": "2016
a
",
"vidjil_json_version": "2016
b
",
"samples": {
"number": 2,
...
...
@@ -157,7 +157,7 @@ some clones, and added external data (=data=).
{
"producer": "user Bob, via Vidjil webapp",
"timestamp": "2014-10-01 12:00:11",
"vidjil_json_version": "2016
a
",
"vidjil_json_version": "2016
b
",
"samples": {
"number": 2,
...
...
@@ -221,7 +221,7 @@ representative clone of the cluster.
#+BEGIN_SRC js
"producer": "my-repseq-software -z -k (v. 123)", // arbitrary string, user/software/version/options producing this file [required]
"timestamp": "2014-10-01 12:00:11", // last modification date [required]
"vidjil_json_version": "2016
a
", // version of the .json format [required]
"vidjil_json_version": "2016
b
", // version of the .json format [required]
#+END_SRC
...
...
tools/defs.py
View file @
294ae521
VIDJIL_JSON_VERSION_REQUIRED
=
"2014.10"
VIDJIL_JSON_VERSION
=
"2016
a
"
VIDJIL_JSON_VERSION
=
"2016
b
"
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