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Commit 27c9d54c authored by Mathieu Giraud's avatar Mathieu Giraud

core/segment.h: update the comment on DETECT_THRESHOLD

parent 5298c86f
......@@ -23,9 +23,11 @@
is above this threshold, then a sequence with no clearly attributed
stranf will be marked as STRAND_NOT_CONSISTEN */
#define DETECT_THRESHOLD 5 /* If the number of both V and J affectations
is above this threshold, then the sequence,
if it not segmented, will be marked as AMBIGUOUS */
#define DETECT_THRESHOLD 5 /* This threshold only affects the classification of unsegmented sequences.
If the numbers of both V and J affectations are above this threshold,
then the unsegmented sequence will be marked as AMBIGUOUS.
Otherwise, if the number of either V or J affectations if above this threshold,
then the unsegmented sequence will be marked as either ONLY V or ONLY J. */
#define JSON_REMEMBER_BEST 4 /* The number of V/D/J predictions to keep */
......
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