Commit 234e2520 authored by flothoni's avatar flothoni

fuse.py; add a test on number of clone exported depending of the top value

Link to #4213
parent 0740a0e5
Pipeline #127449 passed with stages
in 5 minutes and 18 seconds
......@@ -5,3 +5,15 @@ $ Fuse the two examples (three samples, two identical)
$ IGH and TRG germlines
:"germline": {"TRG": \[250000, 250000, 300000\], "IGH": \[85662, 85662, 10124\]}
### Test the number of clones getted
!LAUNCH: python ../../fuse.py ../../../doc/analysis-example2.vidjil ; cat fused.vidjil
$ Default top threshold is set to 50, so each clone should be present
4:"sequence"
!LAUNCH: python ../../fuse.py --top 3 ../../../doc/analysis-example2.vidjil ; cat fused.vidjil
$ Change top to 3 (for 4 clones present)
3:"sequence"
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