IMGTPost: Get the nt-sequences rather than junctions

In this case sequences are longer, which is more interesting and IMGT provides
the start and stop positions, which is more robust.
Additionnally we also have access to all CDR and FR regions for the future.

browser/js/crossDomain.js

@@ -37,10 +37,10 @@ function initImgtInput() {
     imgtInput["l01p01c33"] = "Y";
     imgtInput["l01p01c34"] = "Y";
     imgtInput["l01p01c46"] = "N";
-    imgtInput["l01p01c47"] = "N";
+    imgtInput["l01p01c47"] = "Y"; // nt-sequences
     imgtInput["l01p01c48"] = "N";
     imgtInput["l01p01c49"] = "N";
-    imgtInput["l01p01c50"] = "Y";
+    imgtInput["l01p01c50"] = "N"; // Junction
     imgtInput["l01p01c51"] = "N";
     imgtInput["l01p01c52"] = "N";
     imgtInput["l01p01c53"] = "N";
@@ -254,11 +254,11 @@ function imgtPostForSegmenter(data, system) {
             input.id = 'imgt_vdj_input_check';
             $(input).on("click", function() {
                 if(this.checked) {
-                    segment.highlight[2].field = "3'V-REGION";
+                    segment.highlight[2].field = "V-REGION";
                     segment.highlight[2].color = "#4b4";
                     segment.highlight[3].field = "D-REGION";
                     segment.highlight[3].color = "#b44";
-                    segment.highlight[4].field = "5'J-REGION";
+                    segment.highlight[4].field = "J-REGION";
                     segment.highlight[4].color = "#aa2";
                 } else {
                     segment.highlight[2].field = "";

browser/js/segmenter.js

@@ -861,9 +861,9 @@ Segment.prototype = {
 
         //Add external infos like IMGT's ... to selectbox values in a static way
         // as imgt info might not have been requested at the moment of menu buidling.
-        result.push("3'V-REGION");
-        result.push("5'J-REGION");
-        result.push("D Region");
+        result.push("V-REGION");
+        result.push("J-REGION");
+        result.push("D-REGION");
         result.push("CDR3-IMGT");