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vidjil
vidjil
Commits
22414ad2
Commit
22414ad2
authored
Nov 26, 2018
by
Mathieu Giraud
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doc/vidjil-algo: 2018.10
Partially reverts
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doc/vidjil-algo.md
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22414ad2
# vidjil-algo 2018.10
-dev
# vidjil-algo 2018.10
**Command-line manual**
*The Vidjil team (Mathieu, Mikaël, Aurélien, Florian, Marc, Tatiana and Rayan)*
...
...
@@ -70,8 +70,6 @@ Vidjil-algo has been successfully tested on the following platforms :
-
Ubuntu 18.04 LTS
-
OS X 10.9, 10.10, 10.11
Use Vidjil-algo 2018.07.2 for a wide support of these platforms.
Vidjil-algo is developed with continuous integration using systematic unit and functional testing.
The development team internally uses
[
Gitlab CI
](
http://gitlab.vidjil.org/pipelines
)
and
[
Jenkins
](
https://jenkins-ci.org/
)
for that.
...
...
@@ -84,9 +82,7 @@ To compile Vidjil-algo, make sure:
-
to be on a POSIX system ;
-
to have a C++11 compiler (as
`g++`
4.8 or above,
`g++`
7.3 being supported, or
`clang`
3.3 or above).
Note that the 2018.10-dev version of Vidjil-algo does not work with
`g++`
8.0 or above and with
`clang`
.
Use the 2018.07.2 version for a wider support.
This version of Vidjil-algo does not work with
`g++`
8.0 or above.
-
to have the
`zlib`
installed (
`zlib1g-dev`
package under Debian/Ubuntu,
`zlib-devel`
package under Fedora/CentOS).
...
...
@@ -641,7 +637,7 @@ For example `-uu -X 1000` splits the unsegmented reads from the 1000 first reads
## AIRR .tsv output
Since version 2018.10
-dev
, vidjil-algo supports the
[
AIRR format
](
http://docs.airr-community.org/en/latest/datarep/rearrangements.html#fields
)
.
Since version 2018.10, vidjil-algo supports the
[
AIRR format
](
http://docs.airr-community.org/en/latest/datarep/rearrangements.html#fields
)
.
We export all required fields, some optional fields, as also some custom fields (+).
Note that Vidjil-algo is designed to efficiently gather reads from large datasets into clones.
...
...
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