Commit 223c9a49 authored by HERBERT Ryan's avatar HERBERT Ryan Committed by Mathieu Giraud

task.py separate germline folder

With the new vidjil packaging, the vidjil executable may not be situated
in the vidjil directory. Therefore it has become necessary to add a
separate DIR_GERMLINE variable to task.py which needs to be added to
defs.py
parent f47e3f37
......@@ -156,7 +156,7 @@ def run_vidjil(id_file, id_config, id_data, grep_reads,
return "FAIL"
## les chemins d'acces a vidjil / aux fichiers de sequences
germline_folder = defs.DIR_VIDJIL + '/germline/'
germline_folder = defs.DIR_GERMLINE
upload_folder = defs.DIR_SEQUENCES
out_folder = defs.DIR_OUT_VIDJIL_ID % id_data
......
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