Commit 20922526 authored by Marc Duez's avatar Marc Duez

server : fuse.py don't need --germline anymore

parent a8a7aa1c
......@@ -122,7 +122,7 @@ def run_vidjil(id_file, id_config, id_data, id_fuse):
if row.results_file.data_file is not None :
files += os.path.abspath(os.path.dirname(sys.argv[0])) + "/applications/vidjil/uploads/"+row.results_file.data_file+" "
cmd = "python ../fuse.py -o "+output_file+" -t 100 -g "+vidjil_germline+" "+files
cmd = "python ../fuse.py -o "+output_file+" -t 100 "+files
p = Popen(cmd, shell=True, stdin=PIPE, stdout=PIPE, stderr=STDOUT, close_fds=True)
p.wait()
......@@ -193,7 +193,7 @@ def run_fuse_only(id_file, id_config, id_data, id_fuse):
if row.sequence_file.data_file is not None :
files += os.path.abspath(os.path.dirname(sys.argv[0])) + "/applications/vidjil/uploads/"+row.sequence_file.data_file+" "
cmd = "python ../fuse.py -o "+output_file+" -t 100 -g "+vidjil_germline+" "+files
cmd = "python ../fuse.py -o "+output_file+" -t 100 "+files
print cmd
p = Popen(cmd, shell=True, stdin=PIPE, stdout=PIPE, stderr=STDOUT, close_fds=True)
......
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