Commit 1f17c27a authored by Thonier Florian's avatar Thonier Florian
Browse files

tools/test; update tests

Link to #3944
parent d83354ca
Pipeline #90718 passed with stage
in 7 seconds
...@@ -31,7 +31,7 @@ $ Correct number of entries for some keys (2*30 + 1 by repertoire) ...@@ -31,7 +31,7 @@ $ Correct number of entries for some keys (2*30 + 1 by repertoire)
############################ ############################
### Part with real clones ## ### Part with real clones ##
############################ ############################
!LAUNCH: python3 ../../fuse.py -D --no-clones --output fused_with_real_clones_and_complete_distributions.vidjil ../../../algo/tests/data/results_five_segmented_clones.vidjil ../../../algo/tests/data/results-two-clones-1-2.vidjil ../../../algo/tests/data/results-two-clones-1-3.vidjil; cat fused_with_real_clones_and_complete_distributions.vidjil !LAUNCH: python3 ../../fuse.py -d germline,seg5 --no-clones --output fused_with_real_clones_and_complete_distributions.vidjil ../../../algo/tests/data/results_five_segmented_clones.vidjil ../../../algo/tests/data/results-two-clones-1-2.vidjil ../../../algo/tests/data/results-two-clones-1-3.vidjil; cat fused_with_real_clones_and_complete_distributions.vidjil
$ Get correct keys for distributions json content $ Get correct keys for distributions json content
1:"repertoires" 1:"repertoires"
...@@ -41,8 +41,8 @@ $ Get correct keys for distributions json content ...@@ -41,8 +41,8 @@ $ Get correct keys for distributions json content
$ No clones $ No clones
0:"id" 0:"id"
$ Correct number of entries for some keys (61 by repertoire) $ Correct number of entries for some keys (1 by repertoire)
183:"seg5" 3:"seg5"
$ Get correct files names $ Get correct files names
:sequence_file :sequence_file
...@@ -62,8 +62,8 @@ lr1:{ "axes": \[ "germline", "seg5" \], "values": { "IGK": { .* "IGKV3-15\*01": ...@@ -62,8 +62,8 @@ lr1:{ "axes": \[ "germline", "seg5" \], "values": { "IGK": { .* "IGKV3-15\*01":
$ Case for the two other files (axes: germline, seg5) $ Case for the two other files (axes: germline, seg5)
lr1:{ "axes": \[ "germline", "seg5" \], "values": { "IGH": { "\?": \[ 2, 900 \] } } }, lr1:{ "axes": \[ "germline", "seg5" \], "values": { "IGH": { "\?": \[ 2, 900 \]
lr1:{ "axes": \[ "germline", "seg5" \], "values": { "IGH": { "\?": \[ 2, 350 \] } } }, lr1:{ "axes": \[ "germline", "seg5" \], "values": { "IGH": { "\?": \[ 2, 350 \]
......
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