tests: tdd, AIRR fields 'vj_in_frame' and 'stop_codon'

see #3569

algo/tests/should-get-tests/airr-S22.should

@@ -29,9 +29,9 @@ $ One clone has 8 reads, two clones have 5 reads
 1:IGH 8
 2:IGH 5
 
-$ Two clones are productive, no clone is labeled as non-productive
-2:\tT\t
-0:\tF\t
+$ Two clones are productive (productive, vj_in_frame, NOT stop_codon), no clone is labeled as non-productive
+2:\tT\tT\tF\t
+0:\tF\t[FT]\t[FT]\t
 
 $ v_call for 2 clones (-z 2)
 2:IGHV

algo/tests/should-get-tests/productive.should

@@ -17,4 +17,17 @@ $ Cause of unproductivity
 :clones[0].seg.junction.unproductive: stop-codon
 0:clones[1].seg.junction.unproductive
 :clones[2].seg.junction.unproductive: out-of-frame
-:clones[3].seg.junction.unproductive: too-short
\ No newline at end of file
+:clones[3].seg.junction.unproductive: too-short
+
+!OUTPUT_FILE: out/productive_stop_outframe.tsv
+!LAUNCH: echo
+!OPTIONS: --mod Jr
+
+$ Clone 001, AIRR: NOT productive, vdj_in_frame, stop_codon
+1:001.*\tF\tT\tT\t
+
+$ Clone 002, AIRR: productive, vdj_in_frame, NOT stop_codon
+1:002.*\tT\tT\tF\t
+
+$ Clone 003, AIRR: NOT productive, NOT vdj_in_frame, NULL stop_codon
+1:003.*\tF\tF\t\t