Commit 1a92e21b authored by Mathieu Giraud's avatar Mathieu Giraud
Browse files

tests: we should not detect CDR3 inside incomplete/unusual recombinations

parent 4ae0d4f0
!LAUNCH: $VIDJIL_DIR/vidjil -c segment -3 -g $VIDJIL_DIR/germline -i ../should-vdj-tests/Demo-X5.should-vdj.fa
$ Detects a CDR3 on regular V(D)J recombinations
1: IGH SEG.* [{].*[}]
1: IGK SEG.* [{].*[}]
1: IGL SEG.* [{].*[}]
1: TRA SEG.* [{].*[}]
1: TRB SEG.* [{].*[}]
1: TRG SEG.* [{].*[}]
1: TRD SEG.* [{].*[}]
$ Do not detect a CDR3 on irregular/incomplete recombinations
0: IGH[+] SEG.* [{].*[}]
0: IGK[+] SEG.* [{].*[}]
0: TRA[+]D SEG.* [{].*[}]
0: TRB[+] SEG.* [{].*[}]
0: TRD[+] SEG.* [{].*[}]
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