Commit 1992c443 authored by Mathieu Giraud's avatar Mathieu Giraud
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vidjil: release alpha-2102

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This changelog concerns vijil-algo, the algorithmic part (C++) of the Vidjil platform.
alpha-2102 (alpha version, use with --filter-reads)
* New experimental single-index Aho-Corasick automaton, new option -1 (core/affectanalyser.cpp, core/BitSet.cpp...) !881
This provides at least 5× speed-up on multiple locus filtering. Work is underway to release this version for production.
* Faster --filter-reads with -1
2021-02-18 The Vidjil Team
* New preset --filter-reads to filter potentially huge datasets (vidjil.cpp) #4681
* Better --gz option, outputting also .fa.gz and .affects.gz files (vidjil.cpp) #4692
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# vidjil-algo 2021.02.2
# vidjil-algo alpha-2102
**Command-line manual**
*The Vidjil team (Mathieu, Mikaël, Aurélien, Florian, Marc, Tatiana and Rayan)*
......@@ -19,6 +19,12 @@ This manual can be browsed online:
Other documentation (users and administrators of the web application, developpers) can be found from <http://www.vidjil.org/doc/>.
This release is *alpha software* with an experimental `-1` option
that provides at least 5× speed-up on multiple locus filtering.
It is now intended to be used only with the `--filter-reads` preset.
Sensibility should be equivalent or even better than with the stable version.
Work is underway to release this version for production.
## About
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