latex.py: output clones in a LaTeX table

server/fuse.py

@@ -158,6 +158,9 @@ class Window:
         
         return obj
         
+    def latex(self, point=0):
+        return r"   & & %s & %-50s \\ %% %s" % (self.d["reads"][0], self.d["name"], self.d["id"])
+
     ### print essential info about Window
     def __str__(self):
         return "<window : %s %s %s>" % ( self.d["reads"], '*' if self.d["top"] == sys.maxint else self.d["top"], self.d["id"])

server/latex.py

+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+
+
+import fuse
+import sys
+import argparse
+
+parser = argparse.ArgumentParser()
+parser.add_argument('--threshold', '-t', type=float, default=0.1, help='threshold (%(default)d)')
+parser.add_argument('--verbose', '-v', action='store_true', help='verbose output')
+parser.add_argument('file', nargs='+', help='''.vidjil files''')
+
+
+
+
+def main():
+
+    args = parser.parse_args()
+    datas = []
+
+    for i in args.file:
+        data = fuse.ListWindows()
+        data.load(i, False, verbose = args.verbose)
+        print '  ', i
+        for w in data:
+            if w.d['reads'][0] >= args.threshold:
+                print w.latex()
+        print r'  \hline'
+
+if  __name__ =='__main__':
+    main()
+
+
+
+